BAC Information

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BAC

Clone NameMSMg01-505F10
Chromosome17 (Build37)
Map Location 23,609,881 - 23,610,184
singlet/doubletsinglet
Overlap geneEG619788
Upstream geneEG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775
Downstream geneOlfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505F10.T7 (MSMg01no505_f10.b1)MSMg01-505F10.TJ (MSMg01no505_f10.g1)
ACCAG580002AG580003
length759738
length of high quality
(start - end)		644 (74 - 717)629 (65 - 693)
definitionCHROMAT_FILE: MSMg01no505_f10.b1 PHD_FILE: MSMg01no505_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:13 2005CHROMAT_FILE: MSMg01no505_f10.g1 PHD_FILE: MSMg01no505_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:13 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCATTTGAGGAATACCGAATGGCTGAGAAGCACCTGA
AAAAATGCTCAGCATCCTTTATCATCAGAGAAATGCAAATCAAAACAACA
CTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGAGAGGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGG
TTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCAGCAATACCTCT
CTTGGGCATATATCCAGAATATGTCCTAACAGGTAAGAAGGACACATGCT
CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
CCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTA
CACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCC
TAGGCAAGTGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAA
TCACAAAAGAACTCAAATGATGTGTACTCACTGATAAGTGGATATTAGCC
CAGAAATTTAGTATAGCGAGATATAAGTTACAATTTGCAAAACACATGAA
ACTGAAGAAGAATGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAT
TGGGAACAA

ACAGTGGGAGGCCTGGNGGCCGCTCTTTCAAATAGTTTAGGTGACCTATA
GTATGCCCCACGGAATTCTTTGTTCAGCTCTGAGTCCCATTTTTTAATGG
GGTTATTTGATTTTCCTGTATTTCTTTAAGTGAGTTCTTAATTTCTTTCT
TAAGCTCCTCTACCAGAATCATGAGATACAATTTTAAATCTGAATCTTGC
TTTTCTGGTGTGTAGGGGTATCCAAGACTTGCTGAGGTGAGAGTGCTGGG
TTCTGATAATGGTGAGTGGTCTTGGTTTCTGTTAGTAAGATTCTTACATT
TACCTTTCTCCATTTGGTAATCCCTGGTGTTAGTTGTTATACCTGTGTCT
GGCTGGTGCTTTTTCCTCCTGTGATTCTGTGAGCCTCTGTCAGCACAACT
GGGTGTCCAAGTCTCTCCTGAGTCTCAGTGGTCAGAGTACTCTCTGCAGG
CCACCTCTCCTCTGAAGGGGAACGAGCACAGATGTCTGGAGCTCAGATCT
GCTTCCTGGCTGAAGATGAGGGCCCATAATAGGACCTGTCCTACAGCCTA
TGTTGCTTCTGCAGTCTGCAGAATCTCATGCACAGAGTAGTCTCTCCTGA
AATAATTCTTCACCAAAAATGTACCAACAAATTTCAGCAACACAACTAAA
ATATTAATCAATGTGCCCAAATAACTTCATTCTATGAATGCAAGTATTTT
ATTTATTTCCCTTTTTTTCAGGCTAGTAGCTTTAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_f10.g1 MSMg01no505_f10.g1 CHROMAT_FILE:
MSMg01no505_f10.g1 PHD_FILE: MSMg01no505_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:13 2005
         (629 letters)



>mm_chr17_23609156_23610184
          Length = 1029

 Score =  369 bits (191), Expect = e-106
 Identities = 279/309 (90%), Gaps = 9/309 (2%)
 Strand = Plus / Minus

                                                                        
Query: 325  gtcagcacaactgggtgtccaagtctctcctgagtctcagtggtcagagtactctctgca 384
            ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 gtcagcactcctgggtgtccaagtctctcctgagtctcagtggtcagagtactctctgca 970

                                                                        
Query: 385  ggccacctctcctctgaaggggaacg-agcacagatgtctggagctcagatctgcttcct 443
            ||||||||||||||||  |||||| | ||||||| |||||||||||||||||||||||||
Sbjct: 969  ggccacctctcctctggtggggaa-gaagcacaggtgtctggagctcagatctgcttcct 911

                                                                        
Query: 444  ggctgaagatgagggcccataataggacctgtcctacag--cctatgttgcttctgcagt 501
            |||||||||||| |||||| || ||| ||||| || |||   ||||||| ||||||||||
Sbjct: 910  ggctgaagatga-ggcccagaacagggcctgt-ct-cagaagctatgtttcttctgcagt 854

                                                                        
Query: 502  ctgcagaatctcatgcaca-gagtagtctctcctgaaataattcttcaccaaaaatgtac 560
            | ||||  |||| |||||| |  | ||||||||||||||||||||| ||||||||| |||
Sbjct: 853  ccgcaggctctcctgcacatg-ctggtctctcctgaaataattcttgaccaaaaatctac 795

                                                                        
Query: 561  caacaaatttcagcaacacaactaaaatattaatcaatgtgcccaaataacttcattcta 620
            ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 794  caacagatgtcagcaacacaactaaaatattagtcaatgtgcccaaataacttcattcta 735

                     
Query: 621  tgaatgcaa 629
            |||||||||
Sbjct: 734  tgaatgcaa 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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