BAC Information

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BAC

Clone NameMSMg01-505H01
Chromosome17 (Build37)
Map Location 70,491,117 - 70,491,733
singlet/doubletsinglet
Overlap genenone
Upstream geneEpb4.1l3, 2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535, LOC100043630
Downstream geneLOC623112, LOC623143, Dlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505H01.T7 (MSMg01no505_h01.b1)MSMg01-505H01.TJ (MSMg01no505_h01.g1)
ACCAG580080AG580081
length757759
length of high quality
(start - end)
706 (49 - 754)632 (79 - 710)
definitionCHROMAT_FILE: MSMg01no505_h01.b1 PHD_FILE: MSMg01no505_h01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:21 2005CHROMAT_FILE: MSMg01no505_h01.g1 PHD_FILE: MSMg01no505_h01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGGCTTATACCTAACCATGATAAAAGCAATCTACAGCAAAC
CAGTAGCCAACATCAAAGTAAATGGTGAGAAGCTTGAAGCAATCCCACTA
AAATCAGGGAGTAGACAAGGCTGTCCACTCTCTCCATACCTATTCAACAT
TGTACTTGAAGTCCTAGCCAGAGCAATTTGACAACAAAAGGGGATCAAGG
GGGATACAAATTGGAAAAGATGAAGTCAAACTATCACTTTTTGCAGATGA
TATGATAGTATATATAAGTGACCCTAAATATTCCACCAGAGAACTCCTAA
ATCTGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAGCTCAAAC
AAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAAT
TAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTG
GCGTGACTCTAACTAAGGAAGTGAAAGATTTGTATGATAAAAACTTCAAG
TCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCC
ATGCTTATGGATTGGCAGGATCAACATTGTAAAAGTGGCTATCTTGCCAA
AAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTC
TTCAACGAATTAGAAAGAGCAATCTCTAAATTCATCTGGAATAACAAAAA
ACCTAGG
CCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTTCACCCCAAATATGTC
TCTTACAATATTTATTTTGTTCTATGTCCTATCACGGTGAACCAGAGCTG
TCTGTGTGTCCACCTGATTGAACTTATCAGTGAGAGCCTGGTGAACTCAG
GAGATGATATACAAATAAAGAACAGGTCTATGACCCAGTGGGGATAACCT
TAGCCAAAATGCCCAAGAGTGGGGAGATGGAACCTGAAGAGACACCCTCC
AGTAGATAAACATGGCCCCCATTTGAGGAATGAGCCCACCCACTCATCTT
CAAAAGTCTTGACCCAGAATTCTGTCTAAAGGAAATGCATGGACAAAAAA
AAAAAGAAAAAAAAAAAAAAAAAAGGAGCAATGACTAAAGGAAAGTTTAT
CCAGAGACTGGCCTAATCTGGGATCCATCCTATGGGCAGGCACTAAACCT
GACAGTATTACTGATGCCAGGTTGTGCTTTCAGACAGGAACCTAGCATGG
CTGTCCTCTGAGAGGCTCTTAAGAACAGTTGTCTGGGACAGATGTTGATA
CTTACAGCCAAGCATTGCTGTAAGTAATGTAAGTAAGCTTCCATTCCCTA
TGGAAGAATTAGGGAAAGGATTAAAGGAGCTGAAGGGAGTGGCAAACCCA
TAGGAAGAACAACAATATTAACAATATTAACCAACCCAGATCCCTCAGAA
CTCCCAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_h01.g1 MSMg01no505_h01.g1 CHROMAT_FILE:
MSMg01no505_h01.g1 PHD_FILE: MSMg01no505_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:21 2005
         (632 letters)



>mm_chr17_70490917_70491948
          Length = 1032

 Score = 1007 bits (521), Expect = 0.0
 Identities = 597/641 (93%), Gaps = 33/641 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctttttcaccccaaatatgtctcttacaatatttattttgttctatgtcctatcacggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttttcaccccaaatatgtctcttacaatatttattttgttctatgtcctatcacggt 260

                                                                       
Query: 61  gaaccagagctgtctgtgtgtccacctgattgaacttatcagtgagagcctggtgaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 261 gaaccagagctgtctgtgtgtccacctgattgaacttatcagtgagaacctggtggactc 320

                                                                       
Query: 121 aggagatgatatacaaataaagaacaggtctatgacccagtggggataaccttagccaaa 180
           |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 321 aggagatgatatacaaataaagaacaggtccatgacccagtggggatgaccttagccaaa 380

                                                                       
Query: 181 atgcccaagagtggggagatggaacctgaagagac-accctccagtagataaacatggcc 239
           ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 381 atgcccaagagtggggagatggaacctgaagagaccacc-tccagtagataaacatggcc 439

                                                                       
Query: 240 cccatttgaggaatgagcccacccactcatcttcaaaagtcttgacccagaattct---- 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 440 cccatttgaggaatgagcccacccactcatcttcaaaagtcttgacccagaattctttct 499

                                                                       
Query: 296 gtctaaaggaaatgcatggacaaaaaaaaaaagaaaaaaaaaaaaaaaaaaggagcaatg 355
           |||||||||||||||||||||||||||                        |||||||||
Sbjct: 500 gtctaaaggaaatgcatggacaaaaaat-----------------------ggagcaatg 536

                                                                       
Query: 356 actaaaggaaagtttatccagagactggcctaatctgggatccatcctatgggcaggcac 415
           ||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 537 actgaaggaaagtttttccagagactggcctaatttgggatccatcctatgggcaggcac 596

                                                                       
Query: 416 taaacctgacag----tattactgatgccaggttgtgctttcagacaggaacctagcatg 471
           ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 taaacctgacaggcactattactgatgccaggttgtgctttcagacaggaacctagcatg 656

                                                                       
Query: 472 gctgtcctctgagaggctcttaagaacagttgtctgggacagatgttgatacttacagcc 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gctgtcctctgagaggctcttaagaacagttgtctgggacagatgttgatacttacagcc 716

                                                                       
Query: 532 aagcattgctgtaagtaatgtaagtaagcttccattccctatggaagaattagggaaagg 591
           |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 717 aagcattgctgtaagtaatgtaagcaaccttccattccctatggaagaattagggaaagg 776

                                                    
Query: 592 attaaaggagctgaagggagtggcaaacccataggaagaac 632
           |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 777 attaaaggagctgaagggagtggcaagcccataggaagaac 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)