Query= MSMg01no506_p06.b1 MSMg01no506_p06.b1 CHROMAT_FILE:
MSMg01no506_p06.b1 PHD_FILE: MSMg01no506_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:19 2005
(623 letters)
>mm_chr17_30190280_30191302
Length = 1023
Score = 934 bits (483), Expect = 0.0
Identities = 513/523 (98%), Gaps = 1/523 (0%)
Strand = Plus / Minus
Query: 102 gcagctgctctgcatgggcaaccccaggaaaagggaagaatctacatgccaagctcttcc 161
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1023 gcagctgctctgcatgggcaaccccaggaaaatggaagaatctacatgccaagctcttcc 964
Query: 162 agtattctagtactaacttctccaggctagaaatgggtctaaaaccaaaaatatccaagt 221
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 963 agtattctagtactaacttttccaggctagaaatgggtctaaaaccaaaaatatccaggt 904
Query: 222 tctacaaagagacttatttctggttttgttttggtttgatctggttcagtttcagtttga 281
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 903 tctactaagagacttatttctggttttgtttttgtttgatctggttcagtttcagtttga 844
Query: 282 tttcttgagacaaaagttactgtgtagtgcaagctgacctcaaatttgtggcattcctcc 341
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 tttcttgagacaaaacttactgtgtagtgcaagctgacctcaaatttgtggcattcctcc 784
Query: 342 tgcctcagcctcagaagtgctgccaactgcctgctggggtttctttgttacagggcaggg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tgcctcagcctcagaagtgctgccaactgcctgctggggtttctttgttacagggcaggg 724
Query: 402 caggcactgactaatcacagctcttggttcaatcctttaacacccggagatgaaaacaga 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 caggcactgactaatcacagctcttggttcaatcctttaacacccggagatgaaaacaga 664
Query: 462 gagaaaaggaggaggaagggagaagaggaggtgcagtggaacgggttcactctaaatata 521
||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||
Sbjct: 663 gagaaaaggaggaggaagggagaagaggaggcgcagtggaatgggctcactctaaatata 604
Query: 522 atttcagttacctcagacataaggttatatgactaaagactaaatt-aaaaaaaaaaatt 580
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 603 atttcagttacctcagacataaggttatatgactaaagactaaattaaaaaaaaaaaatt 544
Query: 581 aagcttgttactaacctgcctgccacctagaacagcagttact 623
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aagcttgttactaacctgcctgccacctagaacagcagttact 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_p06.g1 MSMg01no506_p06.g1 CHROMAT_FILE:
MSMg01no506_p06.g1 PHD_FILE: MSMg01no506_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:19 2005
(605 letters)
>mm_chr17_30066832_30067836
Length = 1005
Score = 982 bits (508), Expect = 0.0
Identities = 592/644 (91%), Gaps = 39/644 (6%)
Strand = Plus / Plus
Query: 1 aagcctgctgggggccaaaggagtgagctctttgaccaaatgggacctttgggtctgggt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagcctgctgggggccaaaggagtgagctctttgaccaaatgggacctttgggtctgggc 260
Query: 61 gagctgtaagcctcgaaggcaggatgggctgctcttatttgaatgattttgcagattgga 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 gagctgtaagcctcgaaggcaggatgggctgctcctatttgaatgattttgcagattgga 320
Query: 121 aaaggccttccgttcctcaccccctcctcctcctcctcttcctcctcctctccttcctcc 180
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 321 aaaggccttccgttcctcaccccctcctcctcctccccttcctccttctctccttcctcc 380
Query: 181 ctttctcccatcctcctctccttccattcttccccctcctcctctttccttccttcctt- 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttctcccatcctcctctccttccattcttccccctcctcctctttccttccttccttc 440
Query: 240 -tt----------------------------------ttccttccctcttcttcctcttt 264
|| |||||||||||||||||||||||
Sbjct: 441 cttccttccttccttccttccttccctccttccttccttccttccctcttcttcctcttt 500
Query: 265 cttcccttcctcctctctttcctttcctctttctctccctcttccccctcctagctcttc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcccttcctcctctctttcctttcctctttctctccctcttccccctcctagctcttc 560
Query: 325 t---ctttctccttcccctccttcctccctttcttccatcttcctccccttcctcctctt 381
| |||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||
Sbjct: 561 ttctctttctccttcccctccttcctccctctcttccatcctcctacccttcctcctctt 620
Query: 382 cgtccttttatgctcctctcccatctcccctcccactcctctttctttccttccttcctt 441
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtccttttatgctcctctcccatctcccctcccactcctctttctttccttccttcctt 680
Query: 442 ccctcttcttcctctctttcctcccttccccctctccttcctttcattctcccctccctc 501
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 681 ccctcttcttcctctctttcctcctttccccctcttcttcctttcattctcccctccctc 740
Query: 502 atcctcttcctatctcttctccttctcttcttcctccttttcgccctccctctcttctcc 561
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atcctcttcctatctcttctccttctcttcttcctccttttcgccctccctctcttctct 800
Query: 562 cttcttccagtcttcctcttcctcccctcctctttctttttaca 605
|||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 801 cttcttccagtcttccccttcctcccctcctctttctctttaca 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
