Query= MSMg01no507_l19.b1 MSMg01no507_l19.b1 CHROMAT_FILE:
MSMg01no507_l19.b1 PHD_FILE: MSMg01no507_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:23 2005
(681 letters)
>mm_chr17_85130353_85131437
Length = 1085
Score = 1232 bits (637), Expect = 0.0
Identities = 669/683 (97%), Gaps = 8/683 (1%)
Strand = Plus / Minus
Query: 5 gaattcattagagg---ttcatactacctcgagggggaactgagccgagtcttacatgtc 61
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 gaattcattagagggaat--atactacctcgagggggaactgagccgagtcttacatgtc 828
Query: 62 gt---gtggttctgtcttacagactccaggcattagagctcggcctacaagactccaatg 118
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 827 gtgtggtggttctgtcttatagactccaggcattagagctcggcctacaagactccagtg 768
Query: 119 gttttgtgatcgatgcattgccagtaatcaggttggtatttgatttctgatgtctgaagc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 gttttgtgatcgatgcattgccagtaatcaggttggtatttgatttctgatgtctgaagc 708
Query: 179 actaacactcaggaacgtgtgagtgagtatctgaagccttcggggagttgacgagcggcc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 actaacactcaggaacgtgtgagtgagtatctgaagccttcggggagttgacgagcggcc 648
Query: 239 cttgtggacgccgtgttccctcagtgcttctccaaataagtgccctcctgctttatggcc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 cttgtggacgccgtgttccctcagtgcttctccaaataagtgccctcctgctttatggcc 588
Query: 299 ccaggggacattagaagtcctaagagtgctggtctgggccctggaagttttcacctgccc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ccaggggacattagaagtcctaagagtgctggtctgggccctggaagttttcacctgccc 528
Query: 359 ttcctcggctagtgtgagcaagctggccgtgcgcatgttgtgtgaagagtgagaggcgtg 418
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ttcctctgctagtgtgagcaagctggccgtgcgcatgttgtgtgaagagtgagaggcgtg 468
Query: 419 tgctgtcaggaacgggccttctctcggctccctccatcattcattctcagtgcacagatg 478
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tgctgtcaggaaggggccttctctcggctccctccatcattcattctcagtgcacagatg 408
Query: 479 acctgttgttctaaccacttgtccgcgtgcagctctgtggattaagtaggctgctgtgcc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 acctgttgttctaaccacttgtccgcgtgcagctctgtggattaagtaggctgctgtgcc 348
Query: 539 tgaccctgagtctcttggtaaagttaacccatcctctggcgacgctcactcagtgggtca 598
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 347 tgaccctgagtctcttggtaaagttaacccctcctctggcgacgctcactcagtgggtca 288
Query: 599 ttcgctgcttgtgtaactgtgaaatacacttacagggtgtaaccaatctgatggtctttt 658
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 287 ttcgctgcttgtgtaactgtgaaatacgcttacagggtgtaaccaatctgatggtctttt 228
Query: 659 taaggttgaagctcttgagaagt 681
|||||||||||||||||||||||
Sbjct: 227 taaggttgaagctcttgagaagt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1085
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1075
Effective search space: 721325
Effective search space used: 721325
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_l19.g1 MSMg01no507_l19.g1 CHROMAT_FILE:
MSMg01no507_l19.g1 PHD_FILE: MSMg01no507_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:23 2005
(574 letters)
>mm_chr17_84955701_84956667
Length = 967
Score = 961 bits (497), Expect = 0.0
Identities = 553/575 (96%), Gaps = 9/575 (1%)
Strand = Plus / Plus
Query: 1 attacatttttcccccatggtgttattaaaatgatggaccatttgctttgtttgaattat 60
||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 attacattttttcccc-tggtgttattaaaatgatggacaatttgctttgtttgaattat 259
Query: 61 cgtctacaattcctcaaatgcatttgtgtttttcttcatgtctataatcgctgagcttct 120
| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 260 catttacaattcctcaaatgcattcgtgtttttcttcatgtctataatcgctgagcttct 319
Query: 121 gattaaattacattcttatc-atttagaatattatgatattatagaatattgtataaatt 179
||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gataaaattacattcttacctatttagaatattatgatattatagaatattgtataaatt 379
Query: 180 ccttccttatttagaccttctcatgaagtctcaggtgaggcttcaaataacattaggctc 239
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccttccttatttagaccctctcatgaagtctcaggtgaggcttcaaataacattaggctc 439
Query: 240 cctaccatgcagggattgggtctgtgatctgccgaaagaggacagggacagttagaaggt 299
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 440 tctaccatgcagggattgggtctgtgatctgccaaaaaaggacagggacagttagaaggt 499
Query: 300 ggtaacagtaagtcgacttcactgagttgggtagattcacagtgtggggggtgcagacac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggtaacagtaagtcgacttcactgagttgggtagattcacagtgtggggggtgcagacac 559
Query: 360 tgcacacgtgtccttcaaagattccttacgtctcagtgttctttgcagaagatgccagag 419
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 560 tgcacacgtatccttcaaagattccttacgtctcagtg--ctttgcagaagatgccagag 617
Query: 420 gagtctgtctgttttagatattaaagaagcactgctcacccacctggctcacacgttaca 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 618 gagtctgtctgttttagatattaaagaagc-----tcacccacctggctcacacgttaca 672
Query: 480 gtcacatatcactatttttctctgcattcttctcttgcctacagatggggaacgtttgct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gtcacatatcactatttttctctgcattcttctcttgcctacagatggggaacgtttgct 732
Query: 540 tctatgtggacactttgcacactgtccttgctcta 574
|| ||||||||||||||||||||||||||||||||
Sbjct: 733 tccatgtggacactttgcacactgtccttgctcta 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 967
Length adjustment: 10
Effective length of query: 564
Effective length of database: 957
Effective search space: 539748
Effective search space used: 539748
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
