BAC Information

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BAC

Clone NameMSMg01-507M06
Chromosome17 (Build37)
Map Location 3,395,411 - 3,395,741
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383196, LOC100040029, LOC432993, D030013I16Rik, LOC100040128, 1700024P12Rik, LOC435499, LOC224487, Rbm16, LOC665812, LOC621579, LOC624144
Downstream geneTiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik, Nox3, 4930470H14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507M06.T7 (MSMg01no507_m06.b1)MSMg01-507M06.TJ (MSMg01no507_m06.g1)
ACCAG581837AG581838
length781765
length of high quality
(start - end)
379 (333 - 711)329 (327 - 655)
definitionCHROMAT_FILE: MSMg01no507_m06.b1 PHD_FILE: MSMg01no507_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:25 2005CHROMAT_FILE: MSMg01no507_m06.g1 PHD_FILE: MSMg01no507_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATCCGCGGA
ATTCAAGGCCCATTTTCAAACATGATAAAAGCAATCTACAGCAAACCAGT
AGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAAT
CAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTA
CTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGAT
ACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGA
TAGTATATATAAGTGACCCTAAAAATTTCTCCAGAGAACTCCTAAACCTG
ATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTC
AATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGG
AAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTG
ACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCT
GAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCT
CATGGATTGGCAGGATCAATATTGTAAAAATGGCTATCTTGCCAAAAGCA
ATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAA
TGAATTAGAAGGAGCAATTTGCAAATTCATCTGGGATAACAAAAAACTTA
GGATAGCAAAAACTCTTCTCAAGGATAAAAG
ATGAAGTGGGAGGCCTGGNGGCGCCTGGCTTTTCACTATTGGTGAACTAT
AGAAGGTCTTCTATAACAAAAGTTTTGTGTTCTGTGACTTGGCTTCCATG
GCAACCTTCTTATTCTGCCAGAGGATGTGGTTATTTTGGGGGTGTGCCTT
TGCTTGTACTTGTGCTGACCAGCTCTGTCACCTAGTAACTTCATTTTGAC
CTCGGCTATCTGTCATTTATCTTTGAGATAGAATCACACTCTGTAGTTTT
TGCTACCCTTCAGCTCCTGACAACAATTTTTACCTCAGCCTCTCAGGTGC
TAGGTACATGCAGGTTCAGTTCATCATGTTAGGCTAAGGCATCTATGTTT
AAATCTGTACCACGTGGTGCTGAGTTGAGTGACTTTTAGACCCACTCCAT
TGGTATTAAAACCCCCCGGCTCTGTGTTAATTAAAAAAAAATTGTGGCAG
TTCTATTTGCTTTGTAAATGTTAGACTGATGACTTTCTGCAGTTTTTTTT
TTTTCCAGTTGAGGTCATGAAGCATCTCAAGTGTGTGTCATACTATGTAA
AATATTGTTCTCAATGTGGGTTCATATGTGTGAATGTATACATGTCAACA
AGATATGTCTTAAAATCCAAATAGGGAATTACAAGTTTATCTAACTATAG
TAGAATCTGGTCCTTAATAACTCACCAATGGCATATTTAGCTCAGTTCAC
TTTTTAAAACATTATTGGATATGTGCACCTATGCCACAGTGTGTGTATGG
CCAGTGACAGATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_m06.g1 MSMg01no507_m06.g1 CHROMAT_FILE:
MSMg01no507_m06.g1 PHD_FILE: MSMg01no507_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:25 2005
         (329 letters)



>mm_chr17_3395211_3395941
          Length = 731

 Score =  561 bits (290), Expect = e-164
 Identities = 321/338 (94%), Gaps = 16/338 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttaggctaaggcatctatgtttaaatctgtaccacg-tggtgctgagttgagtgactt 59
           ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 201 tgttaggctaaggcatctatgtttaaatctgtacc-cggtggtgctgagttgagtgactt 259

                                                                       
Query: 60  ttagacccactccattggtattaaaaccccccg------gctctgtgttaattaaaaaaa 113
           ||||||||||||||||||||||||||      |      |||||||||||||||||||||
Sbjct: 260 ttagacccactccattggtattaaaa------gtttttggctctgtgttaattaaaaaaa 313

                                                                       
Query: 114 aa-ttgtggcagttctatttgctttgtaaatgttagactgatgactttctgcagtttttt 172
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aaattgtggcagttctatttgctttgtaaatgttagactgatgactttctgcagtttttt 373

                                                                       
Query: 173 tttttt-ccagttgaggtcatgaagcatctcaagtgtgtgtcatactatgtaaaatattg 231
           |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 374 tttttttccagttgaggtcatgaagcatctcaagtgtgtgtcacactatgtaaaatattg 433

                                                                       
Query: 232 ttctcaatgtgggttcatatgtgtgaatgtatacatgtcaacaagatatgtcttaaaatc 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttctcaatgtgggttcatatgtgtgaatgtatacatgtcaacaagatatgtcttaaaatc 493

                                                 
Query: 292 caaatagggaattacaagtttatctaactatagtagaa 329
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 494 caaatagggaattacaagtttatctaactatagtagaa 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 731
Length adjustment: 9
Effective length of query: 320
Effective length of database: 722
Effective search space:   231040
Effective search space used:   231040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)