BAC Information

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BAC

Clone NameMSMg01-508A17
Chromosome17 (Build37)
Map Location 20,387,872 - 20,388,313
singlet/doubletsinglet
Overlap geneEG627743
Upstream geneLOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6
Downstream geneEG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508A17.T7 (MSMg01no508_a17.b1)MSMg01-508A17.TJ (MSMg01no508_a17.g1)
ACCAG582049AG582050
length748733
length of high quality
(start - end)		622 (54 - 675)625 (86 - 710)
definitionCHROMAT_FILE: MSMg01no508_a17.b1 PHD_FILE: MSMg01no508_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:49 2005CHROMAT_FILE: MSMg01no508_a17.g1 PHD_FILE: MSMg01no508_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:49 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNNAAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCACCTTTCGAATACCGAATGGCAGAGAAGCACCTGA
AAAAATGTTCAACATCCATAATCATCAGGGAAATGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAACAAAAATTCAGG
TGACAGCTGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGG
TTTCTCAGAAAATTGGACATAGTACTACCGGAGGATTCAGCAATACCTCT
CCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGCAGGACACATGCT
CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
CCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTCGTACATCTA
CACAATGGAGTACTACTCTGCTATTAAAAAGAATGAATTTATGAAATTCC
TAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAT
TCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCC
CAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACATGAA
ACACAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAG

CTTAACAACCTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTGACTTGTGTT
GATTTAACAACATTAATAAAATTGTGTGTTCAATGGTAATGATGATACGT
ACATCCTCTTTGAGAGTGCTCAAAATGGAACAGACTTGAATAGAAAGGGG
GCTGCTAGATTGGATTAGTCTATACTTATGGGGACTTCAAACTTCTGTAT
AAAAGGTATGTTATATTGGGAGAGAGGCTTTGTGTTTGTTTCAATAAGAA
TGATGAACAGGCTTTGAATTTCTTCCATTTTTTATATTTGATAAAGGGAG
ACTCCTGAATGCCATGGCTATGGACAGAATAAAGAAATTAAGGGCACAAA
ACTGGACAGAAAACATGATTTGCTAATGCCTCTAAGTGATATCAGCCCTA
ATACTGGTTGAGACATACACATTTCCCTAGTCAGAATTTCTCCTATACAT
TGCCAAAGAAACTTGTTGACTATATAGTTCTCATCACTTCATTCTTTCAT
ATGGGATATAGGGAGATTTATAGGTTCTATGGTTATGAGAGCTTATAAAG
AAAGACAGTCATCATTAGCCTGCTCACAGAGCANGAAATTATTTTTAAGT
GATCTGTGGACATTGCACATTCCAAACATGTGTTACTATAGAGTTATATA
TTACTTTTAAAAGCTTTATGTTCTCATGTAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_a17.g1 MSMg01no508_a17.g1 CHROMAT_FILE:
MSMg01no508_a17.g1 PHD_FILE: MSMg01no508_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:49 2005
         (625 letters)



>mm_chr17_20387872_20388896
          Length = 1025

 Score =  793 bits (410), Expect = 0.0
 Identities = 434/446 (97%), Gaps = 8/446 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttgacttgtgttgatttaacaacattaataaaattgtgtgttcaatggtaatgatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 attttgacttgtgttgatttaacaacattaataaaattgtgtgttcaatggtaatgatga 383

                                                                       
Query: 61  tacgtacatcctctttgagagtgctcaaaatggaacagacttgaatagaaagggggctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tacgtacatcctctttgagagtgctcaaaatggaacagacttgaatagaaagggggctgc 323

                                                                       
Query: 121 tagattggattagtctatacttatggggacttcaaacttctgtataaaaggtatgttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tagattggattagtctatacttatggggacttcaaacttctgtataaaaggtatgttata 263

                                                                       
Query: 181 ttgggagagaggctttgtgtttgtttcaataagaatgatgaacaggctttgaatttcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttgggagagaggctttgtgtttgtttcaataagaatgatgaacaggctttgaatttcttc 203

                                                                       
Query: 241 c----attttttatatttgataaagggagactcctgaatgccatggctatggacagaata 296
           |    |    | | ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 202 caagga----tcagatttgataaagggagactcctgaatgccatggctatgaacagaata 147

                                                                       
Query: 297 aagaaattaagggcacaaaactggacagaaaacatgatttgctaatgcctctaagtgata 356
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 146 aagaaattaagggcacaaaactggacagaaaacatgatgtgctaatgcctctaagtgata 87

                                                                       
Query: 357 tcagccctaatactggttgagacatacacatttccctagtcagaatttctcctatacatt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  tcagccctaatactggttgagacatacacatttccctagtcagaatttctcctatacatt 27

                                     
Query: 417 gccaaagaaacttgttgactatatag 442
           ||||||||||||||||||||||||||
Sbjct: 26  gccaaagaaacttgttgactatatag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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