GGGGGGGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCACTCATTTTCGTAAGTTTGTAATGAACGTCTTACAT
GTAGGAACATTTTAAATTAAAAGAGTTTAATATATCCTCTTCAATCTCTA
TGTTTCTCATTTTATTTGTTCTTGCCCCTGGCTAGGAACTCACATATTAA
AGTTACCTGAGCAAACACTGTTGTCCTTTCCCAGTCCTATGATCATTTAC
TCTTGTGTAGGCATGCTGGCTATAAATGTTAATGGCGATACCTTATCAGT
CTTGACTTCTTTTTATGAGTTGGTTAAAAAATATTGCTCATATTATTCTT
TGGGTAGTTGAGTCATCTGGGAGAAATGACCTCAAGTAACTTTTCACATT
CTAAGTATCTATTTTTATGTTTTCTGTGCAGTGTGTCCCTCCACATTATT
TCTCTATTTCTATTTAATTCTTCTCTTTGTATTATTATTTTTAAATGTTC
CTTATATATTCTATATAAAACTTCTTTTTGAGAACAGTATTGATGAATAT
TTATCTCAATTGTTGTANTTTCTATTGGCACGNAATAATATTTTTTGGAA
AAATAAATTTTTAAAATTTGGCCCAAAAATTGAAGGGGGGTTAAAGGAAA
AATTTTTATTGGGGGGTTTTTTTTCCCCCCCCCCCCCCCNCCNNNNNAAA
AAAAAAANAANATCTTCCCCTNN

NAAGGGTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCGAGGAATACC
GAATGGCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGA
GAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAAT
GGCTAAGATCAAAAATTCAGGTGAGAGCAGATGCTGGCAAGGATGTGAAG
AAAGAAATAGCTGGGATCTTAAAGAACAGTCTAATATGACATTATTAGAC
CAATATAAATTTTAGTTAATTTAGACATTTATGTTCATATTCAATGACAA
ATGTAGCTCTTACCCAAATCAACTGATTTCTTCTTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTCCATCCATACANACATACNTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTCCCTTCGNTCCTTCCTTTTTTTCTTTCTTTCTTTC
TTTCTTTCTCTCTTTCTTTCCACTCCATATTTTATTCCCCCACCCCATCC
ACTCTCTGACTGTTCCAGATCCTAAACTTTCTCCCCACCCCTGTCACCAC
GTAGATGTCCCCATCTGCCACCCTTCTAAACTCCTTGAAACCTATAGTCT
CTTGAGGGTTAGGTGTATTGTCTCTGAATGAACACAGACCCATTTTTTCT
CTTATTTTATGAGGGGCGGGGGCCCCATATCAGCTGGCATAT

Query= MSMg01no509_e03.b1 MSMg01no509_e03.b1 CHROMAT_FILE:
MSMg01no509_e03.b1 PHD_FILE: MSMg01no509_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:26 2005
         (516 letters)



>mm_chr17_77398387_77399302
          Length = 916

 Score =  938 bits (485), Expect = 0.0
 Identities = 503/509 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactcattttcgtaagtttgtaatgaacgtcttacatgtaggaacattttaaatt 64
           ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcactctagtaagtttgtaatgaacgtcttacatgtaggaacattttaaatt 264

                                                                       
Query: 65  aaaagagtttaatatatcctcttcaatctctatgtttctcattttatttgttcttgcccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaagagtttaatatatcctcttcaatctctatgtttctcattttatttgttcttgcccc 324

                                                                       
Query: 125 tggctaggaactcacatattaaagttacctgagcaaacactgttgtcctttcccagtcct 184
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggctagggactcacatattaaagttacctgagcaaacactgttgtcctttcccagtcct 384

                                                                       
Query: 185 atgatcatttactcttgtgtaggcatgctggctataaatgttaatggcgataccttatca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgatcatttactcttgtgtaggcatgctggctataaatgttaatggcgataccttatca 444

                                                                       
Query: 245 gtcttgacttctttttatgagttggttaaaaaatattgctcatattattctttgggtagt 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 gtcttgacttctttttatgagttggtttaaaaatattgctcatattattctttgggtagt 504

                                                                       
Query: 305 tgagtcatctgggagaaatgacctcaagtaacttttcacattctaagtatctatttttat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgagtcatctgggagaaatgacctcaagtaacttttcacattctaagtatctatttttat 564

                                                                       
Query: 365 gttttctgtgcagtgtgtccctccacattatttctctatttctatttaattcttctcttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gttttctgtgcagtgtgtccctccacattatttctctatttctatttaattcttctcttt 624

                                                                       
Query: 425 gtattattatttttaaatgttccttatatattctatataaaacttctttttgagaacagt 484
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 625 gtattattatttttaaatgttccttatatattctatataaaacctctttttgagaacagt 684

                                        
Query: 485 attgatgaatatttatctcaattgttgta 513
           |||||||||||||||||||||||||||||
Sbjct: 685 attgatgaatatttatctcaattgttgta 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no509_e03.g1 MSMg01no509_e03.g1 CHROMAT_FILE:
MSMg01no509_e03.g1 PHD_FILE: MSMg01no509_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:26 2005
         (336 letters)



>mm_chr17_77560458_77561193
          Length = 736

 Score =  634 bits (328), Expect = 0.0
 Identities = 331/332 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacccgaggaataccgaatggctgagaagcacctgaaaaaatgttcaacatccttaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tcacccgaggaataccgaatggctgagaagcacctgaaaaaatgttcaacatccttaatc 604

                                                                       
Query: 61  atcagagaaatgcaaatcaaaacaaccctgagattccatctcacaccagtcagaatggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 atcagagaaatgcaaatcaaaacaaccctgagattccatctcacaccagtcagaatggct 544

                                                                       
Query: 121 aagatcaaaaattcaggtgagagcagatgctggcaaggatgtgaagaaagaaatagctgg 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aagatcaaaaattcaggcgagagcagatgctggcaaggatgtgaagaaagaaatagctgg 484

                                                                       
Query: 181 gatcttaaagaacagtctaatatgacattattagaccaatataaattttagttaatttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gatcttaaagaacagtctaatatgacattattagaccaatataaattttagttaatttag 424

                                                                       
Query: 241 acatttatgttcatattcaatgacaaatgtagctcttacccaaatcaactgatttcttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 acatttatgttcatattcaatgacaaatgtagctcttacccaaatcaactgatttcttct 364

                                           
Query: 301 ttccttccttccttccttccttccttccttcc 332
           ||||||||||||||||||||||||||||||||
Sbjct: 363 ttccttccttccttccttccttccttccttcc 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)