BAC Information

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BAC

Clone NameMSMg01-509I22
Chromosome17 (Build37)
Map Location 34,797,176 - 34,797,778
singlet/doubletsinglet
Overlap genenone
Upstream geneHnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1
Downstream geneTnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509I22.T7 (MSMg01no509_i22.b1)MSMg01-509I22.TJ (MSMg01no509_i22.g1)
ACCAG583205AG583206
length771769
length of high quality
(start - end)
602 (74 - 675)602 (74 - 675)
definitionCHROMAT_FILE: MSMg01no509_i22.b1 PHD_FILE: MSMg01no509_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:49 2005CHROMAT_FILE: MSMg01no509_i22.g1 PHD_FILE: MSMg01no509_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXNATTCGAGAGGATGCGCG
GAATTCATTGAATTTTCAGCTTGATCTCTCTCCCAGAGCAATTATAATAT
ATCCATCAAACTCATAGCCACACTCATTTTGATGAATAAAACTATTTTTA
TATACATAGGGTTTCTCTGAGGAGACCTGGCTGTACTAGAACCCACTCTT
TAGACAAAGTGGCTTCAAACTTTAAGATCTACATGACTCTAGGGATTTAA
GGCAGAAGCCACCACTGCCCAGTCAAGATCCACTTCTATTTTTTAAGTTG
AATTCTTGTACTTATTTATTTATTTATTTTACATATTGACCAGAGTTTAG
ACACTTGCCTATACCCCCAGTTCTTCACACCCTGTCCCTGTATGATAAGG
AGTCTCGCCAGCGACGACACACACACACACACACACACACAGGACATACT
CAGATCCTTCTGCAGCAAAGCTTTCATGCATCTCGAGAGAAAGATGATCA
GTCTGGGGAGGAGACCCAGAACACAGGAAACTCGGACCTTAAATAGACCA
CAAGAGCGGTTGGAGACATATTTCACCCTGACTGGCTGCTCACCATCAGC
CCAGATGACGCCACGGGACAGGCAGGGCACAAGGAATGGAAAAATACCCC
AGCACACGCGCAGACTACTTGTTTACCAGTTAGAACACCGGATATCAGCG
CCATCTTGTATTGGCGATTGCAAGGGGCGCTCCTCACATCTCCCCCCTTT
TCTTTATTTTAAAAGGGACAG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCTGCCTGGACACACCTCCAGTGTCT
ACTTGCATTTTCTCTGTCCTGAGCAGAGAGTCCTGGAAGGCACACCCGCC
ACATGTTCAGCTGTGGAGCGGCTCTGAAGAGAAATCTTCCACTTCTCCCT
TCTCGGGTTTCCCCCAGAGCTCTGCTACTTACCTGGAGAGCCTGGTGGCT
TGCGCTGGCTGCCACACCTCTGAACCTGCACAGTCCCAACCCCAATACGA
GAAGCGTCTCAGGCCGGGTAATTACCCCTTGGCAGCCCTGGACTCTTGGG
GGTGCAGAGGGGGGAACCCTTCACTGGTCCTTGCAGCAGAGGCTCTGGGA
GCCACTGCCAGGACTGTTGATCTCACAGCCTCGACAGAAAGGCAGGGAGC
CTGCAGCGAGCAGGGGGAGGAGAAGGGGAGGACCAGTGTGAGGTCAGGGA
GGGGAGCGGAGATAGGGCAGGCCTTCTCACCCCTTCAGCCCCTCCCACCA
GCCCCTCCCTGTCCATGACCAGAGTGTCCCCCCATACCCTCATCTCAACC
CCTTTGCCTCTTTTTTACGTCCCCCATATTCTTTGCCTATTTCACTTTAA
CCTCCTCCCACCCTAGATTCTGAGCAACCTGACACTCTCCATCCATTCTC
TCTCCTACCTTCTGCCCCCTTCTCTTTAGACCATTTTCTCTTTTTCCGGC
AGCACCATACCTCAAAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_i22.g1 MSMg01no509_i22.g1 CHROMAT_FILE:
MSMg01no509_i22.g1 PHD_FILE: MSMg01no509_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:49 2005
         (602 letters)



>mm_chr17_34796976_34797978
          Length = 1003

 Score = 1143 bits (591), Expect = 0.0
 Identities = 600/603 (99%), Gaps = 1/603 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctgcctggacacacctccagtgtctacttgcattttctctgtcctgagcagagagtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tcctgcctggacacacctccagtgtctacttgcattttctctgtcctgagcagagagtcc 744

                                                                       
Query: 61  tggaaggcacacccgccacatgttcagctgtggagcggctctgaagagaaatcttccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tggaaggcacacccgccacatgttcagctgtggagcggctctgaagagaaatcttccact 684

                                                                       
Query: 121 tctcccttctcgggtttcccccagagctctgctacttacctggagagcctggtggcttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tctcccttctcgggtttcccccagagctctgctacttacctggagagcctggtggcttgc 624

                                                                       
Query: 181 gctggctgccacacctctgaacctgcacagtcccaaccccaatacgagaagcgtctcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gctggctgccacacctctgaacctgcacagtcccaaccccaatacgagaagcgtctcagg 564

                                                                       
Query: 241 ccgggtaattaccccttggcagccctggactcttgggggtgcagaggggggaacccttca 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccgggtaagcaccccttggcagccctggactcttgggggtgcagaggggggaacccttca 504

                                                                       
Query: 301 ctggtccttgcagcagaggctctgggagccactgccaggactgttgatctcacagcctcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctggtccttgcagcagaggctctgggagccactgccaggactgttgatctcacagcctcg 444

                                                                       
Query: 361 acagaaaggcagggagcctgcagcgagcagggggaggagaaggggaggaccagtgtgagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acagaaaggcagggagcctgcagcgagcagggggaggagaaggggaggaccagtgtgagg 384

                                                                       
Query: 421 tcagggaggggagcggagatagggcaggccttctcaccccttcagcccctcccaccagcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcagggaggggagcggagatagggcaggccttctcaccccttcagcccctcccaccagcc 324

                                                                       
Query: 481 cctccctgtccatgaccagagtgtccccccataccctcatctcaacccctttgcctctt- 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 323 cctccctgtccatgaccagagtgtccccccataccctcatctcaacccctttgcctctta 264

                                                                       
Query: 540 ttttacgtcccccatattctttgcctatttcactttaacctcctcccaccctagattctg 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttttacgtcccccatattctttgcctatttcactttaacctcctcccaccctagattctg 204

              
Query: 600 agc 602
           |||
Sbjct: 203 agc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1003
Length adjustment: 10
Effective length of query: 592
Effective length of database: 993
Effective search space:   587856
Effective search space used:   587856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)