BAC Information

Click to search

BAC

Clone NameMSMg01-510D19
Chromosome17 (Build37)
Map Location 52,471,171 - 52,471,429
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043451, LOC100043452, Satb1, EG628919, LOC672987
Downstream geneEG328839, Kcnh8, LOC668506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510D19.T7 (MSMg01no510_d19.b1)MSMg01-510D19.TJ (MSMg01no510_d19.g1)
ACCAG583721AG583722
length749750
length of high quality
(start - end)
674 (76 - 749)259 (324 - 582)
definitionCHROMAT_FILE: MSMg01no510_d19.b1 PHD_FILE: MSMg01no510_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:45 2005CHROMAT_FILE: MSMg01no510_d19.g1 PHD_FILE: MSMg01no510_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAATGCGCGGAA
TTCTCCTGTATTGCGGCATATAAAGTTTGCATTACCAAGGGGCGTCTCTT
TCCAGTGATGACCATCTTCTGCTACATATGCAGCTGGAGATATGAGCTCT
GGGGGTACTGATTAGTTCATAGTATTGTTCCACCTATAGGGTTGCAGACC
CCTTCAGCTCGTTGGATGCTTTCTCTAGCTTCTCCATTGGGGGCCCTGTG
TTCCATCCTATAGATGACTGTGAGCATCCACTTGATAATTTATATAGATA
GTACTTCATTTCATCTTTGTTTGACAAGAAGGGAGTTAGTATATTGCCCC
TTTTATCAAGGAGGGAGCTGAGGCTGAGAGTAGTGTTTACGTTTGAGTGA
CAGCAGTAGAAAATTGTGAAATAAGGAACTAGTACAAGTCTTTTATTCAA
GAGGTGATCCTAGAAGATGCCAGTAGAAAACTTGAGGGGCAAATGAGAAC
AGCAAGGGACATGGCATTAAGCTGGCTTTCATTGTGAGCAGCTTCAGTTT
TATCCTCTAGGGAGATTGTGTTAGTTTCTTTTAAATGTCAACTTGGTACA
ATCGAGAATCATCTGGAAGAGCCTTAATGAAGAATTGTCTGGATCCAGTT
GACCTATGGGCATGTGTGTGTGTATATGCGTGCAATGGCACACGTGTTTG
TGTGTGTATATGTGTGTGTGAGTGTGTTTATGTGCGTATGTAGTGGGGG
CATACTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCAGGAATCAGGCTACCTCTGCCTTGAGCAGTTTGATAGC
AGCTTCCCACAACATAGTGGAGTCATTCTTGCTGCTGGGAACAGAATATC
ATGTGGTCCCTGGAAGGCCTTAGAAATCCCCGTAACTTCCTTTGAGGGAG
ACAGGCCTCATCCCCAGACAAGCTCAGCACAGGTGGGGATGTCTCTAAAA
CAGACTACGGGAAAGGGACAAAAGCAAGTGTTGTAATATATCAAAAAAAA
GGAATCACCACACGATATTTTTAACATTTGCCAATTTTTGAAAAATTGTT
GAGAGTTGCACAAACCTTAAACCATAGAGAAGTTTACAAAATCCAGGAAA
ATGCTTTTGTAACTGATGAGCTGATATTAGCAATAATAATTCTTATTTTT
TTAATTTATACCTTAAAAATATCTTCCTCTATTAATTCACCATTTTTACT
CATTTAAGTATTAAGTATTAATATAAATATGAATATTGATGGTGTATATG
GGGGTGGTATTCTGTCTTTATGGCTTTCTAGTATTCCACTGTGTAGTCTT
AAAAATTTGACCAATTTTCTTTCTATTATGGAATAGGAAAAATGTTTTTT
TGTTGTTGTTGTCGTTTTCTAGAATCTCTAACATCTTTCTGCAATAATTT
TTTGCCTTCTCTTCCAATTATTTCCTAATGAGTAACTCTCGTACGTGGAA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_d19.g1 MSMg01no510_d19.g1 CHROMAT_FILE:
MSMg01no510_d19.g1 PHD_FILE: MSMg01no510_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:46 2005
         (259 letters)



>mm_chr17_52470971_52471629
          Length = 659

 Score =  493 bits (255), Expect = e-144
 Identities = 258/259 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatttgccaatttttgaaaaattgttgagagttgcacaaaccttaaaccatagagaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatttgccaatttttgaaaaattgttgagagttgcacaaaccttaaaccatagagaagt 260

                                                                       
Query: 61  ttacaaaatccaggaaaatgcttttgtaactgatgagctgatattagcaataataattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacaaaatccaggaaaatgcttttgtaactgatgagctgatattagcaataataattct 320

                                                                       
Query: 121 tatttttttaatttataccttaaaaatatcttcctctattaattcaccatttttactcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttttttaatttataccttaaaaatatcttcctctattaattcaccatttttactcat 380

                                                                       
Query: 181 ttaagtattaagtattaatataaatatgaatattgatggtgtatatgggggtggtattct 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 ttaagtattaagtattaatataaatatgaatattgatggtgtgtatgggggtggtattct 440

                              
Query: 241 gtctttatggctttctagt 259
           |||||||||||||||||||
Sbjct: 441 gtctttatggctttctagt 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)