Query= MSMg01no510_l19.b1 MSMg01no510_l19.b1 CHROMAT_FILE:
MSMg01no510_l19.b1 PHD_FILE: MSMg01no510_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:23 2005
(673 letters)
>mm_chr17_73930145_73931217
Length = 1073
Score = 1255 bits (649), Expect = 0.0
Identities = 667/673 (99%)
Strand = Plus / Minus
Query: 1 acatggagggaatatgaaaatgaagatctgatctaataatccataattgatgtgctgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 acatggagggaatatgaaaatgaagatctgatctaataatccataattgatgtgctgtcc 814
Query: 61 cttggtaaggggaaaggtttcgccagctcctccgtggtcaggtcagcgaggctagcaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 cttggtaaggggaaaggtttcgccagctcctccgtggtcaggtcagcgaggctagcaggc 754
Query: 121 tgtttggctggagcttgtcctaaccattggcacaagcatgttcccagtagtattttcctt 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 753 tgtttggctggagcttgtcctaaccattggcacgagcatgttcccagtagtattttcctt 694
Query: 181 ctggaaccttccccatgataggattctcatcagtggtgtggaaggcacgaggaattgtgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ctggaaccttccccatgataggattctcatcagtggtgtggaaggcacgaggaattgtgc 634
Query: 241 tgtatttcttccctctgctggatgtccttgccaaagcaagggtacttcctgctggccgga 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tgtatctcttccctctgctggatgtccttgccaaagcaagggtacttcctgctggccgga 574
Query: 301 cgagaacataggaatgttcttatattcttaggagggactggctgactgacagaagcagga 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 caagaacataggaatgttcttatattcttaggagggactggctgactgacagaagcagga 514
Query: 361 aaggaccagtgagtagcatagcgaatgatatggaagagacatcaacattgacatccaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aaggaccagtgagtagcatagcgaatgatatggaagagacatcaacattgacatccaatg 454
Query: 421 taacagatgggggctataaaaccctatgttcaacctcatcccaacacgcaggtttgcatg 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tagcagatgggggctataaaaccctatgttcaacctcatcccaacacgcaggtttgcatg 394
Query: 481 tgctcaccatgcaccacgcattatgcacatatgcacagacatggactcacacacgggtat 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cgctcaccatgcaccacgcattatgcacatatgcacagacatggactcacacacgggtat 334
Query: 541 tgtctgagagtttgagctgggtgaaccctatagcctcagttttctttataaaatgagaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tgtctgagagtttgagctgggtgaaccctatagcctcagttttctttataaaatgagaac 274
Query: 601 tgtaactggccaacctacttcataagtgtaataaattgttcttttattacagggatttgt 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 273 tgtaactggccaacctacttcataagtgtaataaattgttcttttattacagggctttgt 214
Query: 661 gtactatctgcat 673
|||||||||||||
Sbjct: 213 gtactatctgcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no510_l19.g1 MSMg01no510_l19.g1 CHROMAT_FILE:
MSMg01no510_l19.g1 PHD_FILE: MSMg01no510_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:24 2005
(619 letters)
>mm_chr17_73801132_73802149
Length = 1018
Score = 1137 bits (588), Expect = 0.0
Identities = 611/622 (98%), Gaps = 7/622 (1%)
Strand = Plus / Plus
Query: 1 aaaatgttccaggttgagctcgggaaaaatcacttcagcttgtgaagccataagaatgtg 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaatgttccaggttgagctcaggaaaaatcacttcagcttgtgaagccataagaatgtg 260
Query: 61 gggccaagaagtgactgctctagatggcttggggtcatgaaatgtgggtagcaatgaagg 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 gggccaagaagtgactgctctagattgcttggggtcatgaaatgtgggtagcaatgaagg 320
Query: 121 aaaccaagaggtcagctacaagatcaaaatccctgtcacaacttcctcaggttttctcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaccaagaggtcagctacaagatcaaaatccctgtcacaacttcctcaggttttctcac 380
Query: 181 ctggctggacttgatgaagcatttgaagaatgtctgttagtaatccacagagatggtgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggctggacttgatgaagcatttgaagaatgtctgttagtaatccacagagatggtgag 440
Query: 241 aaatgctc---tttttctgctatatcctgcagctccagtcttttcaaagcagagcagaac 297
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatgctcacat----ctgctatatcctgcagctccagtcttttcaaagcagagcagaac 496
Query: 298 ccagaacaggaggaggaatcccagggtgggagactgggtgggtgggagcctgcagggcca 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ccagaacaggaggaggaatcccagggtgggagactgggtgggtgggagcctgcagggcca 556
Query: 358 agcactgtgaaactcctgcctttagggccttggtacttctgagactccccctcccagccc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agcactgtgaaactcctgcctttagggccttggtacttctgagactccccctcccagccc 616
Query: 418 cctgtgctttcaacctataaaagctgcctctttgatctaaaagagaaaaattgattcagc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cctgtgctttcaacctataaaagctgcctctttgatctaaaagagaaaaattgattcagc 676
Query: 478 ctccaggttgatgctatttgctgagtgttcagagaagctgccccatgcaagggctaacat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctccaggttgatgctatttgctgagtgttcagagaagctgccccatgcaagggctaacat 736
Query: 538 cacaggcacacaagatgcagcagtggggataaaggcaccctcttaatctgtgtagaacac 597
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 737 cacaggcacacaagatgcagcggtggggataaaggcaccctcttaatctgtgtagaacat 796
Query: 598 gctgcgcttctctagaaagcca 619
||||||||||||||||||||||
Sbjct: 797 gctgcgcttctctagaaagcca 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1018
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1008
Effective search space: 613872
Effective search space used: 613872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
