Query= MSMg01no511_d12.b1 MSMg01no511_d12.b1 CHROMAT_FILE:
MSMg01no511_d12.b1 PHD_FILE: MSMg01no511_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:01 2005
(579 letters)
>mm_chr17_45289212_45290191
Length = 980
Score = 1067 bits (552), Expect = 0.0
Identities = 572/582 (98%), Gaps = 7/582 (1%)
Strand = Plus / Plus
Query: 2 gaattctctcattttc----gttggggcagaaggaaaaaacagaagggccctgctgatgc 57
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctctcatt---aaaggttggggcagaaggaaaaaacagaagggccctgctgatgc 258
Query: 58 ccctcgatgaagaccgaccaaagagagcccggagggagatataaagagacctgttttaat 117
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 259 ccctcgatgaagaccgaccaaagagagcccggagggaggtataaagagacctgttttaat 318
Query: 118 tggaaggcttttcccctccattttcttcttcgtgtttttaagttctgacttggatcctag 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tggaaggcttttcccctccattttcttcttcgtgtttttaagttctgacttggatcctag 378
Query: 178 aaattacagcctcttccagcatcgcctctgcggttggaaaaattgctcatttcacttttt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaattacagcctcttccagcatcgcctctgcggttggaaaaattgctcatttcacttttt 438
Query: 238 aaacaaacaatggaaagttccttttaaaggaaaaaaaaatcttattagcccaagtccaaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaacaaacaatggaaagttccttttaaaggaaaaaaaaatcttattagcccaagtccaaa 498
Query: 298 gagatctgctgaggctctcaagcagatctgaagaggttacccaccaccatggctgacatg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gagatctgctgaggctctcaagcagatctgaagaggttacccaccaccatggctgacatg 558
Query: 358 gtccccatggacagcttcaccacagagcccgtgggactccttatcctgagggagggcttg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtccccatggacagcttcaccacagagcccgtgggactccttatcctgagggagggcttg 618
Query: 418 cttcccaaaagagcccacccctcctgctggagccagggtctactgaagacctcacaggca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cttcccaaaagagcccacccctcctgctggagccagggtctactgaagacctcacaggca 678
Query: 478 actcacagaaggaaaccactcagacatgaaaggcagggaatatcctttccccaaataaac 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 actcacagaaggaaaccactcagacatgaaaggcagggaatatcctttccccaaataaac 738
Query: 538 agcctgaggacgctgcattgggaagcaggtcccatcagacaa 579
|||| | |||||||||||||||||||||||||||||||||||
Sbjct: 739 agcccggggacgctgcattgggaagcaggtcccatcagacaa 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 980
Length adjustment: 10
Effective length of query: 569
Effective length of database: 970
Effective search space: 551930
Effective search space used: 551930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_d12.g1 MSMg01no511_d12.g1 CHROMAT_FILE:
MSMg01no511_d12.g1 PHD_FILE: MSMg01no511_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:01 2005
(436 letters)
>mm_chr17_45482819_45483654
Length = 836
Score = 781 bits (404), Expect = 0.0
Identities = 430/446 (96%), Gaps = 12/446 (2%)
Strand = Plus / Minus
Query: 1 tgcctttatcttctatgtatagttggtatacaaacaccttgaagggaaggtctggaaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgcctttatcttctatgtatagttggtatacaaacaccttgaagggaaggtctggaaaga 396
Query: 61 acacaatctgtatctttgccggcaagatatgtggcaacattttctgcccacacttccagg 120
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 395 acacaatctgtatctttgccggcaagatgtgtggcaacatcttctgcccacacttccagg 336
Query: 121 cctaggtccactggatgcggcatggggatgaaggcttcttacttgctagggtccaaagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cctaggtccactggatgcggcatggggatgaaggcttcttacttgctagggtccaaagga 276
Query: 181 agtgataaccgcagaagtcagtagtgaggtggtgaaagaatcattccataaggacattaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 agtgataaccgcagaagtcagtagtgaggtggtgaaagaatcattccataaggacattaa 216
Query: 241 gagcatcgggaatctagtcagatgtagaggggcacacctgtaacactagcttttgagagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gagcatcgggaatctagtcagatgtagaggggcacacctgtaacactagcttttgagagg 156
Query: 301 ctgaggtatgagttcaagaccaacttgggctatatagtgagaacagtacaaatgaattta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ctgaggtatgagttcaagaccaacttgggctatatagtgagaacagtacaaatgaattta 96
Query: 361 ggagtta------------ctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatatag 408
||||||| |||| |||||||||||||||||||||||||||| |||||||
Sbjct: 95 ggagttactctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgagatatag 36
Query: 409 gattatccagaataagggcttctacg 434
||||||||||||||||||||||||||
Sbjct: 35 gattatccagaataagggcttctacg 10
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
