Query= MSMg01no511_n03.b1 MSMg01no511_n03.b1 CHROMAT_FILE:
MSMg01no511_n03.b1 PHD_FILE: MSMg01no511_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:47 2005
(488 letters)
>mm_chr17_56203778_56204665
Length = 888
Score = 866 bits (448), Expect = 0.0
Identities = 475/484 (98%)
Strand = Plus / Minus
Query: 5 ggaattcatggatgttccccttgctcccattcacattgccatgtagcagcggaagcaact 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ggaattcatggatgatcaccttgctcccattcacattgccatgtagcagcggaagcaact 629
Query: 65 gggccaggactgtgggacgagatgggctagatgaagccatgagagggtcccatccatcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gggccaggactgtgggacgagatgggctagatgaagccatgagagggtcccatccatcct 569
Query: 125 cactcttggcaaggagggttggcaaggtacacttcaaagaaagctactcagcacagggtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cactcttggcaaggagggttggcaaggtacacttcaaagaaagctactcagcacagggtt 509
Query: 185 aagactggctaatccacatgtctacttcccagcggccctgagcaatgccatgttgtctga 244
|||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 508 aagactggctaagccacatgtctacttcccagtggccctgagcaatgccatgtggtctga 449
Query: 245 gcaggcactgctctgatccaccaatgtccctaggtttaggacagagggaatggcattgca 304
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gcaggcactgctctgagccaccaatgtccctaggtttaggacagagggaatggcattgca 389
Query: 305 ctctggtccaggtctcaaaactgactcagcattttgctgtgggtgctactaaaatctcta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ctctggtccaggtctcaaaactgactcagcattttgctgtgggtgctactaaaatctcta 329
Query: 365 agggagtcaggcctcggggctcacacctgctattcacattcccagtaattggaagcaagg 424
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 328 agggagccaggcctcggggctcacacctgctattcacattctcagtaattggaagcaagg 269
Query: 425 gaatcaccatgagttcaagaacactgcgagccatctggtaacctcaagacctgtcctgag 484
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 268 gaatcaccatgagttcaagaacactgcgagccatctggcaacctcaagacctgtcctgag 209
Query: 485 tcac 488
||||
Sbjct: 208 tcac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_n03.g1 MSMg01no511_n03.g1 CHROMAT_FILE:
MSMg01no511_n03.g1 PHD_FILE: MSMg01no511_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:47 2005
(521 letters)
>mm_chr17_56041747_56042667
Length = 921
Score = 373 bits (193), Expect = e-107
Identities = 224/239 (93%), Gaps = 10/239 (4%)
Strand = Plus / Plus
Query: 286 gaaaatatccaatttttaaaaagaaaagaaaacttctgcagacaatttggaagctcttca 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gaaaatatccaatttttaaaaagaaaagaaaacttctgcagacaatttggaagctcttca 549
Query: 346 tccatcttccataggtagag-cc--agtctttcaggtatctacaaaggctttttagtgcc 402
||||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct: 550 tccatcttccataggtagataccgaa-------aggtatctacaaaggctttttagtgcc 602
Query: 403 ctgatgaaaaatacacacatagtcttggctccagtgactttctgtagctgagccatttca 462
|||| ||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||
Sbjct: 603 ctgaggaaaaatacacacatagccttggctccagtgactttctggagctgaaccatttca 662
Query: 463 ttgacctgacataacatctctcagaaagactgtgactgtaaattttcagagaggggccc 521
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ttgacctgacataacatctctcagaaagactgtgactgtaaattttcagagaggggccc 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
