BAC Information

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BAC

Clone NameMSMg01-512J19
Chromosome17 (Build37)
Map Location 65,057,272 - 65,057,901
singlet/doubletsinglet
Overlap geneMan2a1
Upstream geneLOC668677, A930002H24Rik, Fert2, LOC669778, Pja2, LOC100043582
Downstream gene4930583I09Rik, LOC100043871, E130009J12Rik, LOC668655, LOC674701, Vapa, Txndc2, Rab31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512J19.T7 (MSMg01no512_j19.b1)MSMg01-512J19.TJ (MSMg01no512_j19.g1)
ACCAG585531AG585532
length7361,248
length of high quality
(start - end)		634 (55 - 688)---
definitionCHROMAT_FILE: MSMg01no512_j19.b1 PHD_FILE: MSMg01no512_j19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:49 2005CHROMAT_FILE: MSMg01no512_j19.g1 PHD_FILE: MSMg01no512_j19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGGGCCGCTATACGACTCCTATCGGGAGAGGATCCGCGGAATTCTCAG
TTAACACTTTTTTTTTTTAAGAACTCATGCTGAGAGTTTGGTGCTACCAT
TTTGTTGGTTGCTTGACCACCAAAACATGGCAATAGCCATAGAATTTAGT
TAATTTTGAGGGTCTACTTATTTAAAAGAAAATATAATTCATGATTATGT
GTTCTCAGTATTTCACTTAAAATGTCAAATAGGAGTTTGTATGTATGTCA
GATAAATTTGTCCTGTGATGTCCTTGAGCAGCATGCTGTGAATCTCTAAT
TATGTTAGAGATTACTTTCTTATCCCTGCGTTTTACTCATTAATATTCTA
CATATTTAGTTTCTTTAATAGATTCTTGGCACAATAATTACATAATCATT
CAATACAGTAGAAACATATTCTGGTCAAATACTAATTATCTACTTAAGTG
AAACAAAAAAAAACTTAGTTCGCAGCTCTACTGTACAATGTGATTTCATA
CGGTATAAAACCAAATATATGCTTAAAACTGTAATTAAGTGTGAGTCATT
TTTCAAGTTTTCTATAGAAAGGACTATGCTTGCTGTTATCTCTGTGTACT
TGCGGTTCTGCTCCAGGCCTGTACACTTCTTCACAGTCTAGCTTTGGATG
GATGCCTCTGAAACTGTACATGTTAGTAGTAAAGTGTTCAATTAGGGTGC
TCTGGAGTATGTGACCATCAGCTCTCCCCGCCCTGT

CGCCTTCCTCTCGCTNGNNGNNGNNGNCGGCGCATCAGACAGAGACGGCG
GGGGNNANNNNNNGNGGNGATGGTTCCGCTATAAAATAGCGGATGCCATC
GCGNACGAAACGAGTNAGATTATGACGCCGCCTCACCTTACATGCTGCCT
TATTTGTCGCCAGAGACGAATAAGAGAGCAGACGAGCGAGGGATGTATTT
ACACTCCTCGGCAAGATATATAAGTCAGTTGGAGTGAGTGTGGTGAGCAG
AGATAACGCTCCGTCGTGTGCACGGCAGCTGGACTGAGAGACAGAGTCGT
GTAGTGTCGTAGTGANTTCNCGTCACAGAGCGGCAGTTAAGTATAGTCGA
CGCNATGGGCTCAGTGCTGCGAGCTACATATAGAGAGACAGAGATGCAAG
GAAGAATTGCACACGAACGATCTGGCGCGTAGAGCGTGTCTGTTGCGTGG
TCACAGTACGTCCGGTCCTAGANTCGACGCGCGCGACGTTCATTCTTCTT
ATTGCTCCGTACTCAATGTCGCTTTGTACCCGATCGGCCTCCNACATCTG
CGCCTCCTCCTATTTATATCTCTCACTGTCTCTTCATCATCGCGTGCGCC
GGCTGCCTGCACGCCTCACCCCGCACCTGATTGCTAGAATGATACCCGAC
GCCCTCACGACCATAATATCCGACCAACGAACTCCAACACGCCTCTCNTC
CTCTACCTCCATCGTTTGTCTTATTTACTATTCTAGCGTCAGATACNTTA
TCCTATGAGACCTCGATCACACCATACCTACATCCATCCTCGATGTATAG
CCACGACACCTATTCCACAATATACCACCCACCCCACTACGCACCTCACT
ACTTCAATCGCCCTTCTCCGTGCTTTGCTCTTCGTACTACCCTTTTCTAC
TCAACACTATATACGACATCTCACACTCAATAATCCTCGTCCTCAATGNC
TCACTGCCACTTTTGCTCTCTCACCTCATATCTCTATTCGTCCGCGTCTC
GCGATATTCGCCCTTTCGTCTTCTTATGATTACTCTCCACACGCGTGCTT
CATGTACTCTCCTCGTACTCCCCGCTACCCACTTATTGACCACACGTGTG
ATCCTCTATTGTCCTCATATTGCTAATTTANACACTCTCCTCCACGACGC
TATCTCTTCTCTTCTCGTATCCTCCCGTACATCTATCATCCTTCTCACCC
GTATATCACTCTTATTCTCTCTCATTATCTCTCATACGTTCACACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_j19.b1 MSMg01no512_j19.b1 CHROMAT_FILE:
MSMg01no512_j19.b1 PHD_FILE: MSMg01no512_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:49 2005
         (634 letters)



>mm_chr17_65057066_65058101
          Length = 1036

 Score = 1120 bits (579), Expect = 0.0
 Identities = 617/631 (97%), Gaps = 5/631 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttttttt-aagaactcatgctgagagtttggtgctaccattttgttggttgcttgaccac 66
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tttttttgaagaactcatgctgagagtttggtgctaccattttgttggttgcttgaccac 266

                                                                       
Query: 67  caaaacatggcaatagccatagaatttagttaattttgagggtctacttatttaaaagaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caaaacatggcaatagccatagaatttagttaattttgagggtctacttatttaaaagaa 326

                                                                       
Query: 127 aatataattcatgattatgtgttctcagtatttcacttaaaatgtcaaataggagtttgt 186
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 327 aatataattcatgattatgtgttctctgtatttcacttaaaatgtcaaataggagtttgt 386

                                                                       
Query: 187 atgtatgtcagataaatttgtcctgtgatgtccttgagcagcatgctgtgaatctctaat 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atgtatgtcagataaatttgtcctgtgatgtccttgagcagcatgctgtgaatctctaat 446

                                                                       
Query: 247 tatgttagagattactttcttatccctgcgttttactcattaatattctacatatttagt 306
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 447 tatgttagagattactttcttatccctgcattttactcattaatattctacatatttagt 506

                                                                       
Query: 307 ttctttaatagattcttggcacaataattacataatcattcaatacagtagaaacatatt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttctttaatagattcttggcacaataattacataatcattcaatacagtagaaacatatt 566

                                                                       
Query: 367 ctggtcaaatactaattatctacttaagtgaaacaaaaaaaaa---cttagttcgcagct 423
           ||| |||||||||||||||||||||||||||||||||||||||   ||| |||| |||||
Sbjct: 567 ctgatcaaatactaattatctacttaagtgaaacaaaaaaaaaaaactttgttcacagct 626

                                                                       
Query: 424 ctactgtacaatgtgatttcatacggtataaaaccaaatatatgcttaaaactgtaatta 483
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 627 ctactgtacaatgtgatttcatacggtacaaaaccaaatatatgcttaaaactgtaatta 686

                                                                       
Query: 484 agtgtgagtcatttttcaagttttctatagaaaggactatgcttgctgttatctctgtgt 543
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 687 agtgtgagtcatttttcaagttttctata-aaaggactatgcttgctgttatctctgtgt 745

                                                                       
Query: 544 acttgcggttctgctccaggcctgtacacttcttcacagtctagctttggatggatgcct 603
           |||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 actcccagttctgctccaggcctgtacacttcttcacagtctagctttggatggatgcct 805

                                          
Query: 604 ctgaaactgtacatgttagtagtaaagtgtt 634
           |||||||||||||||||||||||||||||||
Sbjct: 806 ctgaaactgtacatgttagtagtaaagtgtt 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1036
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1026
Effective search space:   640224
Effective search space used:   640224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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