BAC Information

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BAC

Clone NameMSMg01-512M20
Chromosome17 (Build37)
Map Location 22,783,228 - 22,783,830
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185
Downstream geneENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512M20.T7 (MSMg01no512_m20.b1)MSMg01-512M20.TJ (MSMg01no512_m20.g1)
ACCAG585677AG585678
length787619
length of high quality
(start - end)		620 (34 - 653)---
definitionCHROMAT_FILE: MSMg01no512_m20.b1 PHD_FILE: MSMg01no512_m20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:05 2005CHROMAT_FILE: MSMg01no512_m20.g1 PHD_FILE: MSMg01no512_m20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCCTCA
GCTAGCTGATAATAAAGCCTCTTGCAGTTTGCATCAGGTACAGTTATTGG
GGCGCCTGCCAGCTCATCCTGGGACTTGAGCTGAGGTATCCCCACTTTCA
GGGGTCTTACAGTAGCATCTTTTTTTGCCTCTGAAACTTCACACATACCT
AAGAATTCATTGAAGAATTCATGCAGAAGACAATCCTTACAACTATATTG
AGGTTGCCAAATCCTTTATCTTGGTTTCAGGTCTTAGAAAAGAATTACAT
AGTGGGAAAATCTTTTAGTGGAAAATGATGTGGAATATAATTTCCCCAGA
ACTTTGTCTTTACAGACCACCTAAGTCTCTACACTAAAATCTTTAAGATT
ATGAGAAACTTGTAAACTACTTGTTCCATATTTTAATGTCAGAAAACAAC
AAGAGTACATATTGTGGGGAAAGAAATCTGAAAGTATTACAACGTTGGAA
AATCATTTTTAAATCTTTTAAAAGTTATTTTACTTTTTCTTTTTTTCTTA
TCTTCCTTTTTAAAAATTAATTTATTTTTACACTCCATATTCCATCCCCT
GCCCCCATCCACACTCTGATTGCTCCAAATCCCACACATTCTTCCCACTC
AACCCTGTTTCCATGTGGATACCCCCCTCCCCCACCCCACCTGACATCTA
AACTCCCTGAAGCCTCCAGTATCTTGAGGGTTANGTGCATCATCTCTGAA
TGACACAGACCCAGAAGTTCTCTACTGTATAACATAT

GCCGCTGTCGCACTTANGTGCCTTAGATGATCGTCGATCCANCAACCCTG
ATGGGCTCCGCTGAGTCCGTTTACCTCCTGCATCATGTATTGGTGGNNTC
CTCCAGTGGNNNTCAGGCAAGGCCCCCTTCGTAACCCAAAAGGTTCCCAG
AAAAACCTCCGGGGGGAAATTTTTTCTTTAAGGGGGGAAACCCCCTTTTT
GGGGCCCAGGGGGGCTCTTTTTTTTTCCCGCCCCCCCCCCGGAAAAATTT
TTTTTCCCCCCCTTTTTTACCTTTTTAAAAACCCACCCCCTCTTTAAAGG
GGGGGGCCCCCGGGGGGGAACACTTCCTCTCCCTAAAAAAAAAAAAGCCC
CCCCCCCAAAAAAGGGGGCCGCCCTTTTTTTTTTTGGGGGGGGGGAAAAA
AAAAACCCCCCNCCCCCCTTTTTAAAAAGAAAAAAAAAAAAAANNCAAAC
TCCCCCCCCCCCCCCCNAAAAANAAAAAAAAAAAAAAAAAAGCGGGGGTT
TTCTCCCCCCCCCCCCCCCCNNNCGGAGGGNNAAAAAAAAATCCCACCAN
NNNNNNNNNTNNTTTTCAGCGAAAAGAAGGAAAGACTCTCTCCCTTCTTT
TTGNTNNNNNCGCCCTNNG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_m20.b1 MSMg01no512_m20.b1 CHROMAT_FILE:
MSMg01no512_m20.b1 PHD_FILE: MSMg01no512_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:05 2005
         (620 letters)



>mm_chr17_22783011_22784030
          Length = 1020

 Score = 1073 bits (555), Expect = 0.0
 Identities = 591/603 (98%)
 Strand = Plus / Plus

                                                                       
Query: 18  gctagctgataataaagcctcttgcagtttgcatcaggtacagttattggggcgcctgcc 77
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 218 gctagctgataataaagcctcttgcagtttgcatcaggtacagttattggggcgccggcc 277

                                                                       
Query: 78  agctcatcctgggacttgagctgaggtatccccactttcaggggtcttacagtagcatct 137
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 278 agctcatcctgggacttgagctgaggtctccccactttcaggggtcttacagtagcatct 337

                                                                       
Query: 138 ttttttgcctctgaaacttcacacatacctaagaattcattgaagaattcatgcagaaga 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttttttgcctctgaaacttcacacatacctaagaattcattgaagaattcatgcagaaga 397

                                                                       
Query: 198 caatccttacaactatattgaggttgccaaatcctttatcttggtttcaggtcttagaaa 257
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 caatccttaccactatattgaggttgccaaatcctttatcttggtttcaggtcttagaaa 457

                                                                       
Query: 258 agaattacatagtgggaaaatcttttagtggaaaatgatgtggaatataatttccccaga 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 458 agaattacatagtgggaaaatcttttagtggaaaatgatgtggaatataatttccacaga 517

                                                                       
Query: 318 actttgtctttacagaccacctaagtctctacactaaaatctttaagattatgagaaact 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 518 actttgtctttacagaccacctaagtctctacactaaaatctttaagattatgcgaaact 577

                                                                       
Query: 378 tgtaaactacttgttccatattttaatgtcagaaaacaacaagagtacatattgtgggga 437
           ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 578 tgtaaactatttgttccatattttaatgtcagtaaacaacaagagtacatattgtgggga 637

                                                                       
Query: 438 aagaaatctgaaagtattacaacgttggaaaatcatttttaaatcttttaaaagttattt 497
           ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 aagaattctgaaagtatgacaacgttggaaaatcatttttaaatcttttaaaagttattt 697

                                                                       
Query: 498 tactttttctttttttcttatcttcctttttaaaaattaatttatttttacactccatat 557
           ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 698 tactttttctttttttcttatcttccttttttaaaattaatttatttttacagtccatat 757

                                                                       
Query: 558 tccatcccctgcccccatccacactctgattgctccaaatcccacacattcttcccactc 617
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 758 tccatcccctgcccccatccacactctgattgctccaaatcccacacattctttccactc 817

              
Query: 618 aac 620
           |||
Sbjct: 818 aac 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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