Query= MSMg01no515_a15.b1 MSMg01no515_a15.b1 CHROMAT_FILE:
MSMg01no515_a15.b1 PHD_FILE: MSMg01no515_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:11 2005
(714 letters)
>mm_chr17_87239188_87240301
Length = 1114
Score = 1056 bits (546), Expect = 0.0
Identities = 573/584 (98%), Gaps = 4/584 (0%)
Strand = Plus / Minus
Query: 2 ggaattccacagtatttcccagaatcacacagtccaaatcaatagcaacaaaggaaacgg 61
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ggaattccacagtatctccaagaatcacacagtccaaatcaatagcaacaaaggaaacgg 521
Query: 62 tttagaactctctagtgaacataattttcacagtttcttctgcctccacttcagaggcaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tttagaactctctagtgaacataattttcacagtttcttctgcctccacttcagaggcaa 461
Query: 122 gactactctcttctcttcatttccagtccccaggtccagccatctcggaggccccgaatg 181
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 460 gactactctcttctcttcatttccagtccccaggtccagccatctctgaggccccgaatg 401
Query: 182 gcctgcacaaagagcctcctatggatttgaaaaagccatttttaacctcctcacagccct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gcctgcacaaagagcctcctatggatttgaaaaagccatttttaacctcctcacagccct 341
Query: 242 gcaggacatcatgttcttccatctctcctatgctttctttgtcatactgagaaaacacaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gcaggacatcatgttcttccatctctcctatgctttctttgtcatactgagaaaacacaa 281
Query: 302 acagcaagctgaggagagaggcagctctggatcttaatttcgctggaaacacttcctcac 361
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 280 acagcaagctgaggagagaggcagctctggatcttaatttcactggaaacacttcctcat 221
Query: 362 gtactttaattcaatttggtgacatagttgagagtccctttgccattttggtcatctttc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gtactttaattcaatttggtgacatagttgagagtccctttgccattttggtcatctttc 161
Query: 422 tttgaatcgatttttgttgttttatatctctgttaaagtatggtgcccagggagggacat 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 tttgaatcgatttttgttgttttatatctctgttaaagtatggtgcccagggagggacat 101
Query: 482 aatatgcaggagtagctacccagctatccataatactgtagggttaccaattcctttcac 541
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 aatatgtagaagtagctacccagctatccataatactgtagggttaccaattcctttcac 41
Query: 542 tcagcctatttttttgttagtggagtgcagtggcacgctattgt 585
||||||||||||||| |||||||||||||||||||||||||
Sbjct: 40 tcagcctattttttt----gtggagtgcagtggcacgctattgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space: 777216
Effective search space used: 777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no515_a15.g1 MSMg01no515_a15.g1 CHROMAT_FILE:
MSMg01no515_a15.g1 PHD_FILE: MSMg01no515_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:11 2005
(621 letters)
>mm_chr17_87027421_87028441
Length = 1021
Score = 1096 bits (567), Expect = 0.0
Identities = 600/621 (96%), Gaps = 17/621 (2%)
Strand = Plus / Plus
Query: 1 acaccagcacatccctccttacatgcacctacacctcatttaaaagttaaaaaaataaat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 218 acaccagcacatccctccttacatgcacctacacctcatttaaaagttaaaaaa-taaat 276
Query: 61 gagagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 120
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gagagagagagagagagagagagagagagagagagagagagagaga-------------- 322
Query: 121 gaagagaaccgttgacctgcacagactcaggggttaggggttatgctgtggtaactgctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 --agagaaccgttgacctgcacagactcaggggttaggggttatgctgtggtaactgctt 380
Query: 181 aatgtctgagaagagagcgtctggcccagggcattaccgcagggcttcctccttaggctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtctgagaagagagcgtctggcccagggcattaccgcagggcttcctccttaggctc 440
Query: 241 atctctgctagctgaaggagggagggaggcccatggagggcagaggggaccactgctttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctctgctagctgaaggagggagggaggcccatggagggcagaggggaccactgctttt 500
Query: 301 ctttggagcccacctccccaaccccttaacttgtcacttaacatttgtagcccatgtttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttggagcccacctccccaaccccttaacttgtcacttaacatttgtagcccatgtttt 560
Query: 361 ctaagactgtccttagagctacctcactgaaggctgttactcactgagaggtggttcggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaagactgtccttagagctacctcactgaaggctgttactcactgagaggtggttcggg 620
Query: 421 atctagagaaggccttttctgtcacagagcagtgaagaacctttgccgcatcgagctgcc 480
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 621 atctagagaaggccttttctgtcacagagcagtgaagaatctttgccgcagcgagctgcc 680
Query: 481 atcttgctgctgctaaactcagcgcagttccctgagagccagctagcctcccttgcagcc 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 atcttgctgctgctaaactcagcgcagttccctgagagctagctagcctcccttgcagcc 740
Query: 541 ttcagtttcctgagcaccaggtagaaggagggaatagagctggtgctgggtgaacgcatc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcagtttcctgagcaccaggtagaaggagggaatagagctggtgctgggtgaacgcatc 800
Query: 601 tcaggtgtcaagggaaggtgc 621
||||| |||||||||||||||
Sbjct: 801 tcaggggtcaagggaaggtgc 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
