Query= MSMg01no515_f20.b1 MSMg01no515_f20.b1 CHROMAT_FILE:
MSMg01no515_f20.b1 PHD_FILE: MSMg01no515_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:39 2005
(612 letters)
>mm_chr17_17596876_17597894
Length = 1019
Score = 1050 bits (543), Expect = 0.0
Identities = 595/615 (96%), Gaps = 7/615 (1%)
Strand = Plus / Minus
Query: 5 gaattcaggctggaatatcaaagact---gtgtggtcagaagcatggaaagaagtattca 61
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct: 819 gaattcaggctggaatatcaaagactggagtgtggtcagaagcatgaaaagaagtattaa 760
Query: 62 ataaactagaactgcctagaatttgctcaatcgttctgcattacagcggaactctttaac 121
|||| |||||||||||||||||||||||| |||||||||| ||||| |||||| ||||||
Sbjct: 759 ataacctagaactgcctagaatttgctcagtcgttctgcaatacagtggaactttttaac 700
Query: 122 aaacaaggatctcaggtgattctgtgtacatgtttcacatacagtatat---aaaaggag 178
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 699 aaacaaggatctcaggtgattctgtgtagatgtttcacatacagtatataaaaaaaggag 640
Query: 179 tccaccctgggcagagtctggatcagatgacttgttagttatattgaaaaacaccaagga 238
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 639 tccaccctgggcagagtctggatcagatgacttgttagctatattgaaaaacaccgagga 580
Query: 239 gattagactagtttgtgatagcatttccaagggtaattaggccatgagagctctgaccta 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gattagactagtttgtgatagcatttccaagggtaattaggccatgagagctctgaccta 520
Query: 299 actaatggattaatgccttcacggatttataataggacggtattgttgggagttcatagg 358
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 519 actaatggattaatgccttcacggatttataataggatggtattgttgggagttcatagg 460
Query: 359 ggatggacactggttggggtatgtcactgaaagtgtgtctgtcggggctgtattttgcca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggatggacactggttggggtatgtcactgaaagtgtgtctgtcggggctgtattttgcca 400
Query: 419 tggtttcttcttgtattcatctttttt-gttttttagctgtcaatgtaaactgaccctcc 477
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 399 tggtttcttcttgtattcatctttttttgttttttagctgtcaatgtaaactgaccctcc 340
Query: 478 tcccctgtgtatgtatgcgcacacatctgtgtgtacacttttcctcttttagttcggagt 537
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tcccctgtgtatgtgtgcgcacacatctgtgtgtacacttttcctcttttagttcggagt 280
Query: 538 gacagagaaaacatgttcaaggaaaagtatctactcatgtagtctaaaagagttctagat 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 279 gacagagaaaacatgttcaaggaaaagtatctactcatgtagtctaaaagagttctaaat 220
Query: 598 tttggtttgggtcca 612
|||||||||||||||
Sbjct: 219 tttggtttgggtcca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1019
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1009
Effective search space: 607418
Effective search space used: 607418
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_f20.g1 MSMg01no515_f20.g1 CHROMAT_FILE:
MSMg01no515_f20.g1 PHD_FILE: MSMg01no515_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:39 2005
(648 letters)
>mm_chr17_17445277_17446324
Length = 1048
Score = 1214 bits (628), Expect = 0.0
Identities = 643/648 (99%)
Strand = Plus / Plus
Query: 1 cacatatataaaagtaaaatgtgaacagctgggcgtggtggcacacacgcctttaatccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacatatataaaagtaaaatgtgaacagctgggcgtggtggcacacacgcctttaatccc 260
Query: 61 agcactcaggaggcagaggcaggcggatttctgagtccgaggccagcctggtctacaaag 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcactcgggaggcagaggcaggcggatttctgagtccgaggccagcctggtctacaaag 320
Query: 121 tgagttccaggacagccaggagtgcacagagaaaccctgtctcaaaaaaacccgaaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagttccaggacagccaggagtgcacagagaaaccctgtctcaaaaaaacccgaaaaaa 380
Query: 181 aaaaagtaaaatgtgaaaagtaaaatttccagatcatttgagaatgctccctgcttttac 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 aaaaagtaaaatgtgaaaagtaaaatttccagatcatttgagaatgctccctacttttac 440
Query: 241 tgatgccccaaattgaatacctaccattcaaatcctttggcatctgtctttagagtatgg 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tgatgccccaaattgaatacctaccattaaaatcctttggcatctgtctttagagtatgg 500
Query: 301 tatccaactctttcttctggctttctgtgacactgagatttggtagttacctgtgaaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatccaactctttcttctggctttctgtgacactgagatttggtagttacctgtgaaaac 560
Query: 361 catcaaataagaggtggagaccttgtaggtgaagcaaataatgctgttttggatagctca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catcaaataagaggtggagaccttgtaggtgaagcaaataatgctgttttggatagctca 620
Query: 421 taagaactaaatagaaagagaaagaaattagagagagaaattagggaaacaacacccttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taagaactaaatagaaagagaaagaaattagagagagaaattagggaaacaacacccttc 680
Query: 481 tcaatagtcacaaataatataaaatatcttggtgtgactctaactaagaaagtgaaagat 540
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 681 tcaatagtcacaaataatataaaatatcttggcgtgactctaactaaggaagtgaaagat 740
Query: 541 ctgtatgataaaaacttcaagtctctgaagaaagaaattaaagaagatctcagaagatgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgtatgataaaaacttcaagtctctgaagaaagaaattaaagaagatctcagaagatgg 800
Query: 601 aaagatctcccatgctcatggattggcaggatcaacattgtaaaaatg 648
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaagatctcccatgctcatggattggcaggatcaacattgtaaaaatg 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
