BAC Information

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BAC

Clone NameMSMg01-515G22
Chromosome17 (Build37)
Map Location 50,626,923 - 50,627,605
singlet/doubletsinglet
Overlap genenone
Upstream geneDaam2, Kif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream genePlcl2, EG654432, Tbc1d5, LOC100043451, LOC100043452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515G22.T7 (MSMg01no515_g22.b1)MSMg01-515G22.TJ (MSMg01no515_g22.g1)
ACCAG587673AG587674
length7711,094
length of high quality
(start - end)		687 (51 - 737)---
definitionCHROMAT_FILE: MSMg01no515_g22.b1 PHD_FILE: MSMg01no515_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:45 2005CHROMAT_FILE: MSMg01no515_g22.g1 PHD_FILE: MSMg01no515_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAACCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTGGATTGTTCTTACAGAATGTTGCGGAACACAGAATAG
GGATCTTCGGTGATCAACTGTGTGGATATGTGTTTACTAGATGTCTTTGC
AGTGGGATTTTTCCACTTGACTTTGATGTCCTTTCCATGGAGTCATTACC
CTGCACCTCCCCATTTCAGTATTCTTTTAAAGATGATAAATGCTGTTTGA
CGTAAGATCCAAGGCTGAACTTCCATAGTAGGCTACGGTTTTGGACTTGA
TTTATGTCCATTTGGCCCTTGGGTTGCTTCTGTTTGATCTTAGAAGTTGA
TTAATCTTTCTGGCAAGGCTTCCAGGAATTGATAGTACTGTGCTGCACAT
TACTAGAGCAGAATTATTCAGATGTTCATGTAGTGGCCTTCCTCTGATGG
TTGTTACCCTGTTAAAGTCCTCAAACAGGGCAGCACTTAGATGAAAACCC
CTGAAGGGCAAAGAAATTGTATATGTGGGCCTACCACTGGCTTCTTGTGA
AACGAAAGAAGAGTATGGTCCTGGCTTACTGGTAGTAATATTCCAAGGCT
AGGGAAGCAGACTCCCCAGAGAATACTAAGCCTTCCCCTCATCCATCATA
TCCTTGATAACCTGTGGCTTTCAGTCGGTCAGTGTGGTGACCTTAAAATG
TTCTAGGTGCTTCTGCCCTGTTAAGTCTCTATACCTAGACTTGACCTCAG
ATGTACAGTCACATTGGAAAN

TCCCTCTATTCCGNCGGGTGAGCAAGCGGCCGCCTCATCCCCCACAAAAC
AACGCAGCAATGTAAGGAGACGGCCCAAAAAAAACATCGTGAGCAGAGGC
CGCCGCGCACGGCAAGGCATCTACGCAAGCGACGCAGTCACGCATAACTG
NACTACTACAGCGAGTAGACCACCACAACACACAACAGAGGAGGAGCTCG
AGCAGAGAAACAACTCTACAAAACACGAAGATGACGACCGCTCACGAGCT
GTGCATGAGCTGAAATGATGGCTCGTGTTCATTCTGTGTTCAATGATATT
ATATGAGGCCGCGCTGGCTATCTGTCTCCATCGTCCGCTCTGCCCCGCCT
CCGATTGTCGCGTAAGCACTTCACCGTGCCGTAACTGTATCTTGGCGTGG
GCTCGGTAGCAGCACCACACACTTATGAGTCACTATCTACCATACATGTA
CATCTAATTAACGCGCAAAATGAGTCGGATCGTACGAGAGAGTCAGGCTC
TACTGCATACTGATGACTGAGATAGCGTGGATAGAGCAGGAATTCCGATG
TGAGCAGCAACACGTCTCTCCTAGCGCGCAACACAGGGCATATAATACAT
GAAAGTGCGTAATCCTACAGTCCACCACCAGGCCCCTCAACGGCTAGGCG
GGGGAAGCGTAGCTCATCGACACCCAGTGACACACCACTATACTATCTCT
CCACAGTCCCATTCCCATGCCTCTTCCTCTGCTTGCGCAACTCACCACGC
CAGACAGCAACTCCTAGTAACAGTGGTGAGGGTATCAAAGTATTTCTTCT
CTAGCACCACTNTACTTACGTATTACCCACACCGCCCGCTGTCGCTATAT
CACACGTGTACGCCCGAAGCTCGCAACGATGTAAGGTATGCTCGCCGACT
GCACGCCGCACGACATGAGAGGACCGTCTCTGTGATGCTCAGCCGACAGG
TGTCTNCCGTGCGACCCTGCCTCTNCTCTCNCTCAGTAGAGACGTCACCA
GCAGAGACCGCGCGACGTGCGTGGTCCGACGACGCATGAGTCCCGAGTAC
ATCTAGTGATTATTGGCGGCATCGCATGATATACNGTGTCATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_g22.b1 MSMg01no515_g22.b1 CHROMAT_FILE:
MSMg01no515_g22.b1 PHD_FILE: MSMg01no515_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:45 2005
         (687 letters)



>mm_chr17_50626719_50627805
          Length = 1087

 Score = 1290 bits (667), Expect = 0.0
 Identities = 679/683 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactggattgttcttacagaatgttgcggaacacagaatagggatcttcggtgat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactggattgttcttacagaatgttgcggaacacagaatagggatcttcggtgat 264

                                                                       
Query: 65  caactgtgtggatatgtgtttactagatgtctttgcagtgggatttttccacttgacttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caactgtgtggatatgtgtttactagatgtctttgcagtgggatttttccacttgacttt 324

                                                                       
Query: 125 gatgtcctttccatggagtcattaccctgcacctccccatttcagtattcttttaaagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatgtcctttccatggagtcattaccctgcacctccccatttcagtattcttttaaagat 384

                                                                       
Query: 185 gataaatgctgtttgacgtaagatccaaggctgaacttccatagtaggctacggttttgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gataaatgctgtttgacgtaagatccaaggctgaacttccatagtaggctacggttttgg 444

                                                                       
Query: 245 acttgatttatgtccatttggcccttgggttgcttctgtttgatcttagaagttgattaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acttgatttatgtccatttggcccttgggttgcttctgtttgatcttagaagttgattaa 504

                                                                       
Query: 305 tctttctggcaaggcttccaggaattgatagtactgtgctgcacattactagagcagaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctttctggcaaggcttccaggaattgatagtactgtgctgcacattactagagcagaat 564

                                                                       
Query: 365 tattcagatgttcatgtagtggccttcctctgatggttgttaccctgttaaagtcctcaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tattcagatgttcatgtagtggccttcctctgatggttgttaccctgttaaagtcctcaa 624

                                                                       
Query: 425 acagggcagcacttagatgaaaacccctgaagggcaaagaaattgtatatgtgggcctac 484
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acagggcagcacttagacgaaaacccctgaagggcaaagaaattgtatatgtgggcctac 684

                                                                       
Query: 485 cactggcttcttgtgaaacgaaagaagagtatggtcctggcttactggtagtaatattcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cactggcttcttgtgaaacgaaagaagagtatggtcctggcttactggtagtaatattcc 744

                                                                       
Query: 545 aaggctagggaagcagactccccagagaatactaagccttcccctcatccatcatatcct 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 745 aaggctagggaagcagactccccagagaatactaagccttcccctcatccataatatcct 804

                                                                       
Query: 605 tgataacctgtggctttcagtcggtcagtgtggtgaccttaaaatgttctaggtgcttct 664
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 805 tgataacctgtggctttcagtcggtcagtgtggtgaccttaaaatgctctaggtgcttct 864

                                  
Query: 665 gccctgttaagtctctataccta 687
           ||||| |||||||||||||||||
Sbjct: 865 gccctattaagtctctataccta 887


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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