Query= MSMg01no515_i04.b1 MSMg01no515_i04.b1 CHROMAT_FILE:
MSMg01no515_i04.b1 PHD_FILE: MSMg01no515_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:51 2005
(636 letters)
>mm_chr17_8676429_8677464
Length = 1036
Score = 1013 bits (524), Expect = 0.0
Identities = 542/548 (98%)
Strand = Plus / Minus
Query: 5 gaattctctttcattttcactgcccaacatcccttcccagccctgcagtttggcacactt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gaattctctttcatccccactgcccaacatcccttcccagccctgcagtttggcacactt 489
Query: 65 gtaatgtttgtccaggactgttatttagtaggggatctggaaccaaaggaaactcttggg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gtaatgtttgtccaggactgttatttagtaggggatctggaaccaaaggaaactcttggg 429
Query: 125 tattttggcagccactgatgcataagtaccaatggtaactggcacaggtggctatcgctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tattttggcagccactgatgcataagtaccaatggtaactggcacaggtggctatcgctg 369
Query: 185 taaacatgcctcacccagcacagtgattcacaggacagactgccagttgagcaaggctac 244
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 368 taaacatgcctcacccagcacagtgattcacaggacagactgccagttgagcgaggctac 309
Query: 245 aggtctatttcttaactaaacactgaactctgtaggaaggtgtactgtccacttgtttag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aggtctatttcttaactaaacactgaactctgtaggaaggtgtactgtccacttgtttag 249
Query: 305 cttcttttacatcccatgcatttaaaaccaattgtcagacactactgggcaaggtggcac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cttcttttacatcccatgcatttaaaaccaattgtcagacactactgggcaaggtggcac 189
Query: 365 aagccattaattccagtattccagagacagaagcaagcaaatctctataggtttgaagcc 424
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 aagccattgattccagtattccagagacagaagcaagcaaatctctataggtttgaagcc 129
Query: 425 agcctatagagactgaggctagtctacatgtaaagttccgaactagctaaaccacacagc 484
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 128 agcctatagagactgaggctagtctacatgtaaagttccaaactagctaaaccacacagc 69
Query: 485 aaaaccttgtctcagaaatataaacaaacaaacaaacaaaacaaattgtcttctcttgtt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaaaccttgtctcagaaatataaacaaacaaacaaacaaaacaaattgtcttctcttgtt 9
Query: 545 tggggccc 552
||||||||
Sbjct: 8 tggggccc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_i04.g1 MSMg01no515_i04.g1 CHROMAT_FILE:
MSMg01no515_i04.g1 PHD_FILE: MSMg01no515_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:51 2005
(642 letters)
>mm_chr17_8543515_8544556
Length = 1042
Score = 1241 bits (642), Expect = 0.0
Identities = 642/642 (100%)
Strand = Plus / Plus
Query: 1 agatggtggttcagggagtacaggtgacaactttcttactcatatcacagcagtgatggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatggtggttcagggagtacaggtgacaactttcttactcatatcacagcagtgatggg 260
Query: 61 tcccacacagtggtgggaccacttagctatgtcggtgaagcatgggttccttcctcttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccacacagtggtgggaccacttagctatgtcggtgaagcatgggttccttcctcttgg 320
Query: 121 gcactgctaaaagattcgcttgagtgaagccagccgtctgataacatgtcaaggaagcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcactgctaaaagattcgcttgagtgaagccagccgtctgataacatgtcaaggaagcaa 380
Query: 181 gggaacactggcaaccacaaaggggacaatatttctaggtggacggcatactgtcaggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaacactggcaaccacaaaggggacaatatttctaggtggacggcatactgtcaggca 440
Query: 241 gtgcctgagcctagccacttggctcattgtcagccatttagcctccccttgtctctgctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgcctgagcctagccacttggctcattgtcagccatttagcctccccttgtctctgctg 500
Query: 301 tctcccacatgtggaggctgggcctggcacacaacagcatgatcctccctatcctccgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcccacatgtggaggctgggcctggcacacaacagcatgatcctccctatcctccgtc 560
Query: 361 cccatggtgtctaattctctggcactgccccgggttgtgagcctcgcttgaccacaacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccatggtgtctaattctctggcactgccccgggttgtgagcctcgcttgaccacaacat 620
Query: 421 gtgcagcccggggacaatcaagctaaagagtcctgagacaattgctgctgtctgaatcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgcagcccggggacaatcaagctaaagagtcctgagacaattgctgctgtctgaatcct 680
Query: 481 ctggttgtggtgatgtcacactcggggacaaagcacacccaaggctcaatgactttggac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctggttgtggtgatgtcacactcggggacaaagcacacccaaggctcaatgactttggac 740
Query: 541 aaagggccctttgatcatgcccgctcctgtgtcaggtctgtagagaagcagcaacagtgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaagggccctttgatcatgcccgctcctgtgtcaggtctgtagagaagcagcaacagtgg 800
Query: 601 acatgtcatctaaagagacccttggatgcgagcttacccaag 642
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acatgtcatctaaagagacccttggatgcgagcttacccaag 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
