Query= MSMg01no515_n22.b1 MSMg01no515_n22.b1 CHROMAT_FILE:
MSMg01no515_n22.b1 PHD_FILE: MSMg01no515_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:22 2005
(623 letters)
>mm_chr17_33208395_33209417
Length = 1023
Score = 1100 bits (569), Expect = 0.0
Identities = 602/619 (97%), Gaps = 11/619 (1%)
Strand = Plus / Minus
Query: 5 gaattccaggctatttattattgattcccttgaatagtgctttcagtcaagagttannaa 64
||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 892 gaattccaggcta--gattattgattcccttgaatagtgctttcagtcaacagtt----- 840
Query: 65 aaaaaaaaaaaaaaaaaaaacctacctattagttcttacaaaaagggaggactcctggtg 124
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 839 ----taaaaaaaaaaaaaaacctacctattagctcttacaaaaagggaggactcctggtg 784
Query: 125 atatccttgcaagaatttccttcctcgaatatgtgcagtgggcttccctggttctcaacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 atatccttgcaagaatttccttcctcgaatatgtgcagtgggcttccctggttctcaacc 724
Query: 185 taattctgctgagcacaggctgaggctgttgtaggatgcacctcagtaaaggtctgagtg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 taattctgctgagcacaggctgaggctgttgtaggatgcacctcagtaaaggtctgagtg 664
Query: 245 ctctgctgcaaagtctcaatggtattaccttagatccatgccccagcctgctggaaacta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ctctgctgcaaagtctcaatggtattaccttagatccatgccccagcctgctggaaacta 604
Query: 305 tgcctggaaactgctcagagccatgtagggtataggaagggcgagtgacaggggaaaggg 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 603 tgcctggaaactgctcagagccatggagggtataggaagggcgagtgacaggggaaaggg 544
Query: 365 accacttgcataattgtgccaaagctagcggtcttggtagggcttctctgatttttacaa 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gccacttgcataattgtgccaaagctagcggtcttggtagggcttctctgatttttacaa 484
Query: 425 gttcagtgggaaaaaaaaacagacttaaaaaatcaagtgttacatataaaaagcagtatg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gttcagtgggaaaaaaaaacagacttaaaaaatcaagtgttacatataaaaagcagtatg 424
Query: 485 attaactgtagtgggagtgaaagatactttttgagtaggtgtggagatgagatccgaata 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 attaactgtagtgggagtgaaagatactttttgagtaggtgtggagatgagatccgaata 364
Query: 545 atgtattacttttaaaaggcaatgtataacatttagagatgaaataagactgggagtcca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 atgtattacttttaaaaggcaatgtataacatttagagatgaaataagactgggagtcca 304
Query: 605 aaggaatgtgtcattccat 623
|||||||||||||||||||
Sbjct: 303 aaggaatgtgtcattccat 285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_n22.g1 MSMg01no515_n22.g1 CHROMAT_FILE:
MSMg01no515_n22.g1 PHD_FILE: MSMg01no515_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:22 2005
(529 letters)
>mm_chr17_33028673_33029601
Length = 929
Score = 812 bits (420), Expect = 0.0
Identities = 504/560 (90%), Gaps = 51/560 (9%)
Strand = Plus / Plus
Query: 1 cagactctggtcacggagacaactcttaagagctgctttgagtaggattaggaggaaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagactctggtcacggagacaactcttaagagctgctttgagtaggattaggaggaaggg 260
Query: 61 ccttattaaaggaaacctctcagcccgctctcatcttcccacatcccaccactataccgc 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 ccttattaaaggaaacctctcagcccgctctcatcttcccacatcccaccgctataccgc 320
Query: 121 cagtctgtacaagactttgcgaaatattccaccaataaaattcacaaaaataaccaggtg 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtctgtacaagactttgcgaactattccaccaataaaattcacaaaaataaccaggtg 380
Query: 181 gtggtggcgcatgcctttaatcccagcacttgggaggcagaggcag------gcagattt 234
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gtggtggcgcatgcctttaatcccagcacttgggaggcagaggcagaggcaggcagattt 440
Query: 235 ctgagttcgacgccagcctggtctacagagtgagttccaggacagccagggctatacaga 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgagttcgacgccagcctggtctacagagtgagttccaggacagccagggctatacaga 500
Query: 295 gaaaccctgtctcgaaaaaacaaacaaacaaacaaacaaccaaacaaattgacaaaaata 354
|||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 501 gaaaccctgtctcgaa----caaacaaacaaa----------------ttgacaaaaata 540
Query: 355 ggcaacctgacttgtctctaaccctgcagtttcaaaaa--------caaaa---agcaaa 403
||||||||||||||||||| |||||||||||||||||| ||||| | ||||
Sbjct: 541 ggcaacctgacttgtctctcaccctgcagtttcaaaaaaaaaaaaacaaaacaaaacaaa 600
Query: 404 --caaa--caaa---caaaa-------caaaacaaaaacaaaaaatgtttacccagaaaa 449
|||| |||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 601 aacaaaaacaaaaagcaaaaaaccaaacaaaacaaaaacaaaaaatgtttacccagaaaa 660
Query: 450 ccagtttctgggcctgttgaaatcagcgccctcctgccctgctctctactgcaaaaacgg 509
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 661 ccagtttctgggcctgttgaaatcagtgccctcctgccctgctctctactgcaaaaacgg 720
Query: 510 attttcagagcctttgtgat 529
||||||||||||||||||||
Sbjct: 721 attttcagagcctttgtgat 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
