Query= MSMg01no517_i15.b1 MSMg01no517_i15.b1 CHROMAT_FILE:
MSMg01no517_i15.b1 PHD_FILE: MSMg01no517_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:39 2005
(522 letters)
>mm_chr17_71191671_71192592
Length = 922
Score = 888 bits (459), Expect = 0.0
Identities = 510/537 (94%), Gaps = 20/537 (3%)
Strand = Plus / Minus
Query: 5 gaattcttttgtgcctactgtttttatggtataactttttgtttgtttacttttaaactc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaattcttttgtgtctactgtttttatggtataactttttgtttgtttacttttaaactc 487
Query: 65 cctgtgtttaaataccttcttttcgggcatatttaactgggtttttcatttagtctctgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cctgtgtttaaataccttcttttcgggcatatttaactgggtttttcatttagtctctgc 427
Query: 125 ttttgagttactttgtttagtcactttacaccttatacagtttcagcaccaagcccagct 184
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tttcgagtcactttgtttagtcactttacaccttatacagtttcagcaccaagcccagct 367
Query: 185 atctcttgatgaatttgtagtccatgtacggatggttttcccctgcctttgtattcctcc 244
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 366 atctcttgatgaatttgtagtccatgtacgtatggttttcccctgcctttgtattcctcc 307
Query: 245 gtttttttcctcattttagtttaattagtattttctagtattttttcttcagtttttatt 304
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 g-ttttttcctcattttagtttaattagtattttctagtattttttcttcagtttttatt 248
Query: 305 ttcagtcatggttagtttaattgttgtg-g-------------ttttttttttttttttt 350
|||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 247 ttcagtcatggttagtttaattgttgtgtgtttttttttttttttttttttttttttttt 188
Query: 351 ttttttttg----g-ctcactaaatagaccatgctggccttgaactcacagagttctctt 405
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ttttttttgtcttgtctcactaaatagaccatgctggccttgaactcacagagttctctt 128
Query: 406 cctcccaagctctggagtcaaaggcattttctactccacccagccacccagccatactgg 465
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 cctcccaagctctagaatcaaaggcattttctactccacccagccacccagccatactgt 68
Query: 466 taattctgagtggttgtagggacaagaacgcgtgcctttagttattcaagtctccgg 522
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 taattctgagtggttgtagggacaagaacgcgtgcctttagttattcaagtctccgg 11
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_i15.g1 MSMg01no517_i15.g1 CHROMAT_FILE:
MSMg01no517_i15.g1 PHD_FILE: MSMg01no517_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:40 2005
(653 letters)
>mm_chr17_71010041_71011094
Length = 1054
Score = 1174 bits (607), Expect = 0.0
Identities = 649/677 (95%), Gaps = 25/677 (3%)
Strand = Plus / Plus
Query: 1 cagagacagaggcaggaggatttctttaagttcaaggccagcctagtctacatagagagc 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 179 cagagacagaggcaggaggatttctttgagttcaaggccagcctagtctacatagagagc 238
Query: 61 tcctagacagtcaggactacataaagagtcaattaattaattcattgattaataataaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tcctagacagtcaggactacataaagagtcaattaattaattcattgattaataataaag 298
Query: 121 ataaatttatggatttttttaaatgaaaagtgaaacctgacaatagtttgaaatcttttt 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ataaatttatgga-ttttttaaatgaaaagtgaaacctgacaatagtttgaaatcttttt 357
Query: 181 tttt-attttttagtaggtaatttcctcatttacatttccaatgctatcccaaaagtccc 239
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 358 ttttaattttttagtaggtaatttcctcgtttacatttccaatgctatcccaaaagtccc 417
Query: 240 cca----------------------tacccacccactccccctttttggccctggcgttc 277
||| |||||||||||||||||||||||||||||||||||
Sbjct: 418 ccatacccacccacccccactcccctacccacccactccccctttttggccctggcgttc 477
Query: 278 ccctgtactggggcatataaagtttgcaagtccaatgggcctctctttccagtgatggcc 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ccctgtactggggcatataaagtttgcaagtccaatgggcctctctttccagtgatggcc 537
Query: 338 aactagtccatcttttgaatagtttgaaatcttgatagtgcttttttaagatttttgaca 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aactagtccatcttttgaatagtttgaaatcttgatagtgcttttttaagatttttgaca 597
Query: 398 tatctgggtttggcctatcttagcaaagtatatattttgcaaaacaaaataaaattaaaa 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tatctgggtttggcctatcttagcaaagtatatattttgcaaaacaaaataaaattaaaa 657
Query: 458 atgcatgtttcataccgtgcactcaacttcagtcaaccttgaaatgatttgacggactag 517
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 atgcatgtttcatactgtgcactcaacttcagtcaaccttgaaatgatttgacggactag 717
Query: 518 tcacttcaaaaggcatagtaaaataatttacaaaaatagcagttgctaaaaaa-tttaca 576
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 718 tcacttcaaaaggcatagtaaaataatttacaaaaatagcagttgctaaaaaaatttaca 777
Query: 577 tgaactctgacctcgagccaatgaactttgctcttaaaactcccatttatcaataaggag 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tgaactctgacctcgagccaatgaactttgctcttaaaactcccatttatcaataaggag 837
Query: 637 gggctggagtacagagc 653
|||||||||||||||||
Sbjct: 838 gggctggagtacagagc 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1054
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1044
Effective search space: 671292
Effective search space used: 671292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
