Query= MSMg01no517_n11.b1 MSMg01no517_n11.b1 CHROMAT_FILE:
MSMg01no517_n11.b1 PHD_FILE: MSMg01no517_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:04 2005
(591 letters)
>mm_chr17_31720606_31721596
Length = 991
Score = 1054 bits (545), Expect = 0.0
Identities = 566/573 (98%), Gaps = 2/573 (0%)
Strand = Plus / Plus
Query: 15 agcactctgtggctgtttagcctccaggagcttgcagatcctactttaaatacattagac 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 agcactctgtggctgtttagcctccaggagcttgcagatcctactttaaatacattagac 274
Query: 75 atccattactatcagagctcagagctagcagttgctcatgttaactcattaagtgaccac 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 atccattactatcagagctcagagctagcagttgctcatgttaactcattaagtgaccac 334
Query: 135 ctcctggccagccgccaaaccaattttaggctattttattgcacgtgcaagcttatggtg 194
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 335 ctcctggccagccgccaaaccaattttaggctattttattgcatgtgcaagcttatggtg 394
Query: 195 ctagagattaaaaactgagtgggtgcttgccggtggtggtggtgcatgcctgtaatctag 254
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 395 ctagagattaaaaactgagtgggtgcttgccggtggtggtggtacatgcctgtaatctag 454
Query: 255 cactcaggagatggaggcaaaggctggtgaatctcttgagttcgaggccagcggggtcta 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cactcaggagatggaggcaaaggctggtgaatctcttgagttcgaggccagcggggtcta 514
Query: 315 tggaaggaattccagga-cagccagagctacacagagaaaccctatttcaataagcaaca 373
|||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tggaaggagttccag-atcagccagagctacacagagaaaccctatttcaataagcaaca 573
Query: 374 caatacaaaaaacaacatcaacaacaacaatacaaaacaaaacaggcagccgggcatggt 433
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 574 caatacaaaaaacaacatcaacaacaacaatacaaaacaaaacaggcagccaggcatgat 633
Query: 434 ggtgcacgcctttaatcccagcactcgggaggcagaggtaggcagatttctgagttcaag 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ggtgcacgcctttaatcccagcactcgggaggcagaggtaggcagatttctgagttcaag 693
Query: 494 gccagcctggtctacagagtgagttccaggacagccagggctacacagagaaaccctgtc 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gccagcctggtctacagagtgagttccaggacagccagggctacacagagaaaccctgtc 753
Query: 554 tcgaaaaaccaaaccaaaccaaaccaaaccaaa 586
|||||||||||||||||||||||||||||||||
Sbjct: 754 tcgaaaaaccaaaccaaaccaaaccaaaccaaa 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_n11.g1 MSMg01no517_n11.g1 CHROMAT_FILE:
MSMg01no517_n11.g1 PHD_FILE: MSMg01no517_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:04 2005
(601 letters)
>mm_chr17_31873547_31874547
Length = 1001
Score = 1154 bits (597), Expect = 0.0
Identities = 600/601 (99%)
Strand = Plus / Minus
Query: 1 aatcacgctcttttgaataacacactttggtactgctgtagttttatgatccaaaagtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 aatcacgctcttttgaataacacactttggtactgctgtagttttatgatccaaaagtta 901
Query: 61 gtttgttaaccatcagcatcgtgtgtgccaattccccaaaccctgtgccaatcgttgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 gtttgttaaccatcagcatcgtgtgtgccaattccccaaaccctgtgccaatcgttgcag 841
Query: 121 ggttttgttgttttgggttgttttgttttgttttgtttttgagattcaaagggggtgtgt 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 840 ggttttgttgttttgggttgttttgttttgttttgtttttgagattcaaaaggggtgtgt 781
Query: 181 ccctttcaagggacttctctcccaaccactttactcatggcaggcactgaaggacctcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ccctttcaagggacttctctcccaaccactttactcatggcaggcactgaaggacctcag 721
Query: 241 acaccctaggagaatgacaatgatgtccctgcataccactgccatgcatcctgacaaccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 acaccctaggagaatgacaatgatgtccctgcataccactgccatgcatcctgacaaccg 661
Query: 301 agagaggcctggaacctctctacctcctgagccccaaggatcttccagcacaagaagtat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 agagaggcctggaacctctctacctcctgagccccaaggatcttccagcacaagaagtat 601
Query: 361 gtggtgccagaacgtgggagctccagaaccaaacatttaccagaaaagacagggaaagcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gtggtgccagaacgtgggagctccagaaccaaacatttaccagaaaagacagggaaagcc 541
Query: 421 acgccctacccattcacagatgaatgggttgatactgcaaagggaccgtggccctggcgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 acgccctacccattcacagatgaatgggttgatactgcaaagggaccgtggccctggcgt 481
Query: 481 gggtttgggaggctgaactgccaaggctcccaaagccacagcagttccctactgccttgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gggtttgggaggctgaactgccaaggctcccaaagccacagcagttccctactgccttgc 421
Query: 541 ccggccgtagtaccagtccagaacctcctccccttctgtctccaagttgcttcattgtga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ccggccgtagtaccagtccagaacctcctccccttctgtctccaagttgcttcattgtga 361
Query: 601 g 601
|
Sbjct: 360 g 360
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
