Query= MSMg01no518_o08.b1 MSMg01no518_o08.b1 CHROMAT_FILE:
MSMg01no518_o08.b1 PHD_FILE: MSMg01no518_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:27 2005
(581 letters)
>mm_chr17_88541996_88542976
Length = 981
Score = 1044 bits (540), Expect = 0.0
Identities = 570/580 (98%), Gaps = 3/580 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctatgta-tcttcagctgaccttgaatctgtgctgctcctgcattagcatcc 62
||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 203 ggaattctctatgtagt-ttcagctgaccttgaatctgtgctgctcctgcattagcctcc 261
Query: 63 agtgtgctgagttacaggtttgtgccacagtgctcagcttgtgtgtattttggtttctga 122
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 262 ggtgtgctgagttacaggtttgtgccacagtgctcagcctgtgtgtattttggtttctga 321
Query: 123 tcttctcagctgtcagacacatggcacttccttccagtcttcacactcagagaccacact 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcttctcagctgtcagacacatggcacttccttccagtcttcacactcagagaccacact 381
Query: 183 gcagttccttgtagtcctaggctgaggatacatttaatcaagtcctctcttctt-cctcc 241
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 382 gcggttccttgtagtcctaggctgaggatacatttaatcaagtcctctcttcttcccccc 441
Query: 242 cttctcccttccttcccttcgttgtctcttccttctctctcccctcccttcctccctctc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cttctcccttccttcccttcgttgtctcttccttctctctcccctcccttcctccctctc 501
Query: 302 ttctcttccaaccttccatttctcccttctcttccctcccttttcctccctccctctctt 361
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 502 ttctcttccaaccttccatttctcccttctcttccctcccttttccttcctccctctctt 561
Query: 362 ctcttccaaccctccatttcttccttcttttccttccctgttcctccctccctccctccc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctcttccaaccctccatttcttccttcttttccttccctgttcctccctccctccctccc 621
Query: 422 tctcttgggtcttcccttctttcctttggttcctgacatcttgcttgctatagctccttc 481
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tctctcgggtcttcccttctttcctttggttcctgacatcttgcttgctatagctccttc 681
Query: 482 taatctgtctttacctgtaaataaacttttcaagaaagtcatcaaattctctggtctatg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 taatctgtctttacctgtaaataaacttttcaagaaagtcatcaaattctctggtctatg 741
Query: 542 aatggtttctcccttccactctctttcatgtatctgagtc 581
||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aatggtttctcccttccactctctttcatgtatctgagtc 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_o08.g1 MSMg01no518_o08.g1 CHROMAT_FILE:
MSMg01no518_o08.g1 PHD_FILE: MSMg01no518_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:27 2005
(528 letters)
>mm_chr17_88715927_88716855
Length = 929
Score = 961 bits (497), Expect = 0.0
Identities = 521/529 (98%), Gaps = 1/529 (0%)
Strand = Plus / Minus
Query: 1 tggggatcaaagtcaagtagttagacttggtaacaagtgccttcgcctgcaagatctcac 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tggggatcaaactcaagtagttagacttggtaacaagtgccttcgcctgcaagatctcac 670
Query: 61 tagaccctaaagaaaaagaaattttctaaggaaaaataagttttttagtccatcattaaa 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 669 tagaccctaaagaaaaagaaattttctaaggaaaaatacgttttttagtccatcattaaa 610
Query: 121 aagagacgtttattgtttttaatgtttgctttttcagcactc-gggtcagcattggtgag 179
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 609 aagagacgtttattgtttttaatgtttgctttttcagcactcggggtcagcattggtgag 550
Query: 180 cagctgggatgatttgatgttaaatcctagggtgaccaagagcctcttgcagctctcaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cagctgggatgatttgatgttaaatcctagggtgaccaagagcctcttgcagctctcaca 490
Query: 240 ctgagcctcagcattagctgtggtgacaagcaggaagggctgtcatcttatggctgccag 299
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 489 ctgagcctcagcattagctgtggtgacaaccaggaagggctgtcatcttatggctgccag 430
Query: 300 tttaatgtagtggaagatgtttggccctctggagttggaacagataacctttggtttaag 359
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tttaatggagtggaagacgtttggccctctggagttggaacagataacctttggtttaag 370
Query: 360 atggagtttccctccagccaggagtgctgaggcaaaccctgcaagactcaacagaggtaa 419
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 369 atggagtttccctgcagccaggagtgctgaggcaaaccctgtaagactcaacagaggtaa 310
Query: 420 caagctttatgtcagcttggccggctggaaaggggactctgcagctgtgggcgatggcct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 caagctttatgtcagcttggccggctggaaaggggactctgcagctgtgggcgatggcct 250
Query: 480 ttccaggcttttctcccagccatctgcctctctcacgtgtgtgtgtgtg 528
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttccaggcttttctcccagccatctgcctctctcacgtgtgtgtgtgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 929
Length adjustment: 10
Effective length of query: 518
Effective length of database: 919
Effective search space: 476042
Effective search space used: 476042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
