BAC Information

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BAC

Clone NameMSMg01-519K02
Chromosome17 (Build37)
Map Location 32,333,794 - 32,333,907
singlet/doubletsinglet
Overlap geneBrd4
Upstream geneTmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9
Downstream geneLOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519K02.T7 (MSMg01no519_k02.b1)MSMg01-519K02.TJ (MSMg01no519_k02.g1)
ACCAG590855AG590856
length797799
length of high quality
(start - end)
119 (42 - 160)119 (71 - 189)
definitionCHROMAT_FILE: MSMg01no519_k02.b1 PHD_FILE: MSMg01no519_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:24 2005CHROMAT_FILE: MSMg01no519_k02.g1 PHD_FILE: MSMg01no519_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTATTTTATTTTTAACTCTCTTCTCCTCAGACACAGTGGCACTGCTTATC
TCCAAATGGTGTGATCGTCTCCTCAGTGAGCGGCGGCTCCCACTNGCGCT
GTGGGTAGTGGTGTGAACTGTGGCTGTACTGTATAGTGAACATAGTNTGG
CATATCTTNTGTTTGAAGTTTGGTTGGTGATTCNNNCACCANANNACTGG
NNGTGTANNAAAAANNACAAAAACTAAAAAAACCCACAAACCACCCAAAA
CTCACAAAAAAAATCCTGCTTGTATTCAGTTTCAAACTTTATTAGTCTCA
CTTTTAATTAATAAAAACCCAGAAAGCCTGCCAATTTTCCTTTTTCCCCT
TCCAACCCCCTTTAAATTTTGGGTGGGGGCCTTCCCTTTGGGTTTTTTTT
TTAAAAAGGGGCCACAAACCGGGTTTTGGTTTTTTCCCCAAAAAAAAGGG
GAAAAACCCCCGGGGGAAGGGCCTCCTCCACCAGCTCTTTTTTGGGGGGG
GTCGTTCCCAAAACCCCCCNNNNNNNNNNNNTTGGTGGAGGCAGCAGCAG
GNNNNNGTGGGGAGAAAAATGGGGGTGTGTTGCGCCTCTTTTCTTTTCAT
AAAAAAANAAATTTTGGGGGGGGGCGGGTTGTGTGGTTTANNAAAAANTT
NNGACCCCTCCCCTGGTGGGAGGGAGTTTATATTTTGTGGTTTTTGTAAA
ACACCCCCCCCCTTCTCCNCNNNNTTTGGGGGTTGTGTGTGCCCTCT
GACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTTCTCGCGGAATTCCAGGCTAGTCTGGACTACTGAGTGAGAC
ATGTCTCAGAAAAGAACAAAGGAGAAGAGGGAAGTGAAGAGAAAGGATAA
AAGACCAAAGAGAGGAAGGAGAGAAGAGGTAAAAGCTAACCCTGGGGAAG
NNTAGACAGNCNCTTTGACCTCCCCTCCTGTTAGGCAGGGACGGCCCTCC
TAGATGTCCTGGAACCCCTTACATGTGGGTGGATAGGCTCTTCAGAGGGA
CTTGAGGGGTCTTTGTAAAACATGGGGTCTGTTTTCATTAGTACCCCTTC
CCGAAGACTCTACCCACTAAGGTCGGTCTTTTTCCTGGGCCCTGGCNAAA
AGCCCCCTTTTCCCCTTGGGCCCCGCCAAAATGGGGGTTGCCTGGGGCCC
TCTTGTTTTGAAAAGGGGAACCCCCGGCCTTGAAGAGTTAGAAAAAAATT
TGACCCCCCCCCTTCCCTCGGGGCTCAAAGTGGCGCGGGGGGGGTAAAGG
GGGGAAAACAATGTCCCCCCCCCAAAGAATCAACGGTTGTGTCCCCCCCC
CTTTTCCTCCCCCGGGGGGAACAGAGGGTTTTCCCTTGGGGGGAGGAGGG
GAAGAATACCCCCTTGGGGGGGCCCCCTCTAAATATATATTTTTTGTGGG
GGAGGGTGGGGGGTACCCCCCGGGGGTGGGGGGGGTGGTCGGCCCCCCCC
CGCGCTCTTTTTTTTGTGGTGCACCCACCCCCTCCTTGTTGTTTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_k02.b1 MSMg01no519_k02.b1 CHROMAT_FILE:
MSMg01no519_k02.b1 PHD_FILE: MSMg01no519_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:24 2005
         (119 letters)



>mm_chr17_32333590_32334107
          Length = 518

 Score =  215 bits (111), Expect = 9e-61
 Identities = 114/115 (99%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctattttatttttaactctcttctcctcagacacagtggcactgcttatctccaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gaattctattttatttttaactctcttctcctcagacacagtggcactgcttatctccaa 259

                                                                  
Query: 65  atggtgtgatcgtctcctcagtgagcggcggctcccactngcgctgtgggtagtg 119
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 258 atggtgtgatcgtctcctcagtgagcggcggctcccact-gcgctgtgggtagtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 518
Length adjustment: 8
Effective length of query: 111
Effective length of database: 510
Effective search space:    56610
Effective search space used:    56610
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)