BAC Information

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BAC

Clone NameMSMg01-520A22
Chromosome17 (Build37)
Map Location 21,885,706 - 21,886,312
singlet/doubletsinglet
Overlap geneBC043476
Upstream geneLOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760
Downstream gene4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520A22.T7 (MSMg01no520_a22.b1)MSMg01-520A22.TJ (MSMg01no520_a22.g1)
ACCAG591182AG591183
length771764
length of high quality
(start - end)		611 (49 - 659)649 (80 - 728)
definitionCHROMAT_FILE: MSMg01no520_a22.b1 PHD_FILE: MSMg01no520_a22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:58 2005CHROMAT_FILE: MSMg01no520_a22.g1 PHD_FILE: MSMg01no520_a22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAATCATATTTCATAGACATTTGGTTTTTTTTTTCATATTTA
TGATCTGATCCTGCACAATTTAACTCTTGTACTTCTGATTCTATTTGTTC
ATCAATGCTTATCTTACTCATAAATTATGAGAATCATGTTACTCTTTTTG
TACAAACTGTTGCAGTCATAATTATTCCTGTGATGGTAACAATAAGCTAT
TCAATAAAGCATTTTGTCCTTTTTAGAAATCTATCAAGGACTTGTATCAT
AGTAGCTACAACAAACCCCTCTTCCCATGGCCTGGTCAGTTACAGGTAAC
TATAATCCTATAATTTACAATAAAACTAATCTCACTATTAAGATTAATGT
TAAGGCTACCTATAGCAAAAACATAGGGCAACTTTACACAAAAAGCTATA
TGAAAGGGGTTGCAAAAGAATTAAAATGACTGGAACAGGTGTGTCTAAAA
TTACTAGATCATGTCTGTATTGAAGTTAATGCTGCCAGGATTTTCCAAAT
ATTCCATTGTTCAGGTTCCAGTTCATTATTAAGCCAAATCCTAATGCTAG
AGGGAGCTCAGCCTCCATCATGCCAAGCTATTAACCCTGTGGGTTCAGAG
TAAAAAAATAGTGTAATTATGAACATGCCATAGAACCAACTGATTTTAAT
TACACCATTGACTGTTATCTGACAGAACAAACTCCCGCTGGGCGGTGGTG
GTGCATGCCTTTAATCCCAGA

NNNGGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACAGGAGAGAAGCCTTACA
AATATACTGAATGTGACAAATGCTTTAGCCAGAAACAATATTAGCTCTTA
TCAGAGAATGCACACAGTAGACACCTTCACAAATGAAGAGAATGAGAAAA
ATCTGTTTCCAAGGAAGATCATCTTAGAATTCATCAGAGACTACATATAG
GAGAAGGAACTTATAAGTATAGTAAATGTTCAAATCCTTTACTGTTGGTT
CACCACTTAAAATACATCAAAGAATGCATCCAGGATAAAAAAAAAACTTA
TGAATGTGATATATAAGGAAAGGACTTTACCCAAATTTCAGACCTAAGAA
AATACCTGGTTATTTATATTCAGAAAAAAGTGTCCACTGGAAAAAAAAAA
TGGCATGTGCGTTATCCAAGCGGTATTGTTTGCAACACTTGAAGCTCCAC
ACTAGAGAATTATTATATGTGTGAGGAAGTTGGGAACACATTTAAATAAT
CCTCAAATCTTAGGACCTACCCAGTGTTTATGCTGAGAGAAGCTGAAAAT
GCGACAATGAAGGAAATCTTTCATTAAAAGTTTTTACTTGTTCACTTTCA
AATATGTCATGATGGAGAAGCTAGAAGAATATGGAGTTGTGTAAGCTTTC
CTAGAGACTGAAATGATCTATTTCAAAGAGAAGCTGTGAAATACATGCCT
CAAAATAGCTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_a22.b1 MSMg01no520_a22.b1 CHROMAT_FILE:
MSMg01no520_a22.b1 PHD_FILE: MSMg01no520_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:58 2005
         (611 letters)



>mm_chr17_21885503_21886512
          Length = 1010

 Score = 1152 bits (596), Expect = 0.0
 Identities = 605/608 (99%), Gaps = 1/608 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaatcatatttcatagacatttggttttttttttcatatttatgatctgatcc 63
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaatcatatttcatagacatttgg-tttttttttcatatttatgatctgatcc 262

                                                                       
Query: 64  tgcacaatttaactcttgtacttctgattctatttgttcatcaatgcttatcttactcat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgcacaatttaactcttgtacttctgattctatttgttcatcaatgcttatcttactcat 322

                                                                       
Query: 124 aaattatgagaatcatgttactctttttgtacaaactgttgcagtcataattattcctgt 183
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 323 aaattatgagaatcatgttactctttttgtacaaactgttgcaatcataattattcctgt 382

                                                                       
Query: 184 gatggtaacaataagctattcaataaagcattttgtcctttttagaaatctatcaaggac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gatggtaacaataagctattcaataaagcattttgtcctttttagaaatctatcaaggac 442

                                                                       
Query: 244 ttgtatcatagtagctacaacaaacccctcttcccatggcctggtcagttacaggtaact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttgtatcatagtagctacaacaaacccctcttcccatggcctggtcagttacaggtaact 502

                                                                       
Query: 304 ataatcctataatttacaataaaactaatctcactattaagattaatgttaaggctacct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ataatcctataatttacaataaaactaatctcactattaagattaatgttaaggctacct 562

                                                                       
Query: 364 atagcaaaaacatagggcaactttacacaaaaagctatatgaaaggggttgcaaaagaat 423
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 563 atagcaaaaacatagggcaactttacacaaaaagttatatgaaaggggttgcaaaagaat 622

                                                                       
Query: 424 taaaatgactggaacaggtgtgtctaaaattactagatcatgtctgtattgaagttaatg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 taaaatgactggaacaggtgtgtctaaaattactagatcatgtctgtattgaagttaatg 682

                                                                       
Query: 484 ctgccaggattttccaaatattccattgttcaggttccagttcattattaagccaaatcc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctgccaggattttccaaatattccattgttcaggttccagttcattattaagccaaatcc 742

                                                                       
Query: 544 taatgctagagggagctcagcctccatcatgccaagctattaaccctgtgggttcagagt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 taatgctagagggagctcagcctccatcatgccaagctattaaccctgtgggttcagagt 802

                   
Query: 604 aaaaaaat 611
           ||||||||
Sbjct: 803 aaaaaaat 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1010
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1000
Effective search space:   601000
Effective search space used:   601000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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