BAC Information

Click to search

BAC

Clone NameMSMg01-520C17
Chromosome17 (Build37)
Map Location 56,044,109 - 56,075,700
singlet/doubletdoublet
Overlap geneEG433125
Upstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426
Downstream geneBC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520C17.T7 (MSMg01no520_c17.b1)MSMg01-520C17.TJ (MSMg01no520_c17.g1)
ACCAG591267AG591268
length747757
length of high quality
(start - end)		696 (52 - 747)666 (80 - 745)
definitionCHROMAT_FILE: MSMg01no520_c17.b1 PHD_FILE: MSMg01no520_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:08 2005CHROMAT_FILE: MSMg01no520_c17.g1 PHD_FILE: MSMg01no520_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,075,171 - 56,075,700)(56,044,109 - 56,044,774)
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGAGTCTTTGTGAGAATACTCCAAGAAAACCCTAACTAA
GGTTAGGGTTTTACTGCTGTGAACAAACACCATGATCAAGGTAAGTCTTA
TAAAGGACAACATTTAATTGGGCCTGACTTACAGGTTCAGAGGTTCGGTC
CATTACATCAAGGTGGGAGCATGGCAGCATCTAGACAGGCATGGTGTGGG
CAGAGCTGAGTTCTACATCTTCATCTGAAGGCTGCTAGTGGAGGACTGAT
GTCCAGCAGCTAGGATGAGGGTCTTAAGCCCATGCTTACAGTGACACACC
TACTCCAACAAGGCCACACCTCCTAATAGTGCTACTCACTGGTCCAAGTA
TATACAAAACAGTCACATGACCTAAGTGCCTTCAAAACACAGAATTATTC
TTGGAATGTATTTGTATGCTCCTCTCAGGTGTTGCAAATAGGAGTGAGTT
TATTTCAGATTACTCACTGTTTAATGTTGTTATTTAATTGTTTAAACTAT
CTTTTATATGTCTGTTTGGTTTTGTAATTGTATATTCCTTCACTCATTAG
AACTATACTTGTCTTCATGGCTCTACAACTCCATAGCCCTGCCCTCTTCC
TTTTATTTAGGGGTAGTCTCTGCAGACACGTTGGAAGCTCTTCATCCATC
TTCCATAGGTAGAGCCAGCCTTTCAGGTATCTACAAAGGCTTTTTAG

AACCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATGTTGAAGCTGGACCCCC
AACACTCCAGAGCACTTTCTTTTGGATTAAACAACTAACTCTACTCTGAG
TTGGCAAAAGGAAAAAGTCTTAATAAAATGACTAATAACCATGAATACAG
GGTCTATTCAATCACACCCTTAGCAGGATGCACCAAGGTCTGTCTTTGCC
TTAGGCCTGTACAGTTGCAGCTCACACCGCACCCAGACTGAAGATGAGTC
TGTCCTATAGCCATCAGCTATTTACTGAGCTCCTTTCTGCAAGACCCATT
TAGTGTGGGTCCTTCTCCCATCTGAGGATCTAGGACTTCAAGAAAGGGCT
GTTCACCGCACATCTTGAAAGTGACTCTACCATGAGTCCTCCACACTGTT
ATCCTCTGACACATACACTTTGGGATGTCCACACAGGTCCCAGATAAATT
ACAACTACCCATGTCCATTCTCCTATGGTGGTGTTGTACAAATGTTCTCC
TATGGTGGTGGAACAGACAGCAGAGAACTACACTGCATCCCTTCCATTTG
ACAAAATCCACTCAACAATGGCGATATTCACCACCAAGTATCATCTTCAT
GCTGCACTGTCTTACAGCCTCCATATCCCAGACTTTTAAATGCCAGGGCA
GGTCACTTTTTCCTCCAATCCATGCAAGTGATCTTCTTGGATGGCAGATA
AAATGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_c17.b1 MSMg01no520_c17.b1 CHROMAT_FILE:
MSMg01no520_c17.b1 PHD_FILE: MSMg01no520_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:08 2005
         (696 letters)



>mm_chr17_56074605_56075700
          Length = 1096

 Score =  994 bits (514), Expect = 0.0
 Identities = 526/530 (99%)
 Strand = Plus / Minus

                                                                        
Query: 167  agcatggcagcatctagacaggcatggtgtgggcagagctgagttctacatcttcatctg 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 agcatggcagcatctagacaggcatggtgtgggcagagctgagttctacatcttcatctg 1037

                                                                        
Query: 227  aaggctgctagtggaggactgatgtccagcagctaggatgagggtcttaagcccatgctt 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 aaggctgctagtggaggactgatgtccagcagctaggatgagggtcttaagcccatgctt 977

                                                                        
Query: 287  acagtgacacacctactccaacaaggccacacctcctaatagtgctactcactggtccaa 346
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 976  acagtgacacacctactccaacaaggccacacctcctaatagtgctactcactggtccga 917

                                                                        
Query: 347  gtatatacaaaacagtcacatgacctaagtgccttcaaaacacagaattattcttggaat 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  gtatatacaaaacagtcacatgacctaagtgccttcaaaacacagaattattcttggaat 857

                                                                        
Query: 407  gtatttgtatgctcctctcaggtgttgcaaataggagtgagtttatttcagattactcac 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  gtatttgtatgctcctctcaggtgttgcaaataggagtgagtttatttcagattactcac 797

                                                                        
Query: 467  tgtttaatgttgttatttaattgtttaaactatcttttatatgtctgtttggttttgtaa 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  tgtttaatgttgttatttaattgtttaaactatcttttatatgtctgtttggttttgtaa 737

                                                                        
Query: 527  ttgtatattccttcactcattagaactatacttgtcttcatggctctacaactccatagc 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  ttgtatattccttcactcattagaactatacttgtcttcatggctctacaactccatagc 677

                                                                        
Query: 587  cctgccctcttccttttatttaggggtagtctctgcagacacgttggaagctcttcatcc 646
            ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 676  cctgccctcttccttttatttaggggtagtctctgcagacatgttgggagctcttcatcc 617

                                                              
Query: 647  atcttccataggtagagccagcctttcaggtatctacaaaggctttttag 696
            |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 616  atcttccataggtagagccagcctttcaggtatctacagaggctttttag 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no520_c17.g1 MSMg01no520_c17.g1 CHROMAT_FILE:
MSMg01no520_c17.g1 PHD_FILE: MSMg01no520_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:08 2005
         (666 letters)



>mm_chr17_56043909_56044974
          Length = 1066

 Score = 1210 bits (626), Expect = 0.0
 Identities = 656/666 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatgttgaagctggacccccaacactccagagcactttcttttggattaaacaactaac 60
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 201 caatgttgaagctggacccccaacactccagggcactttcttttggattaaacatctaac 260

                                                                       
Query: 61  tctactctgagttggcaaaaggaaaaagtcttaataaaatgactaataaccatgaataca 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctactctgagttggcaaaagaaaaaagtcttaataaaatgactaataaccatgaataca 320

                                                                       
Query: 121 gggtctattcaatcacacccttagcaggatgcaccaaggtctgtctttgccttaggcctg 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtctgttcaatcacacccttagcaggatgcaccaaggtctgtctttgccttaggcctg 380

                                                                       
Query: 181 tacagttgcagctcacaccgcacccagactgaagatgagtctgtcctatagccatcagct 240
           |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tacagttgcagctcacaccgcatccagactgaagatgagtctgtcctatggccatcagct 440

                                                                       
Query: 241 atttactgagctcctttctgcaagacccatttagtgtgggtccttctcccatctgaggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttactgagctcctttctgcaagacccatttagtgtgggtccttctcccatctgaggat 500

                                                                       
Query: 301 ctaggacttcaagaaagggctgttcaccgcacatcttgaaagtgactctaccatgagtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaggacttcaagaaagggctgttcaccgcacatcttgaaagtgactctaccatgagtcc 560

                                                                       
Query: 361 tccacactgttatcctctgacacatacactttgggatgtccacacaggtcccagataaat 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccatactgttatcctctgacacatacactttgggatgtccacacaggtcccagataaat 620

                                                                       
Query: 421 tacaactacccatgtccattctcctatggtggtgttgtacaaatgttctcctatggtggt 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacaactacccatggccattctcctatggtggtgttgtacaaatgttctcctatggtggt 680

                                                                       
Query: 481 ggaacagacagcagagaactacactgcatcccttccatttgacaaaatccactcaacaat 540
           || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggacagacagcagaggactacactgcatcccttccatttgacaaaatccactcaacaat 740

                                                                       
Query: 541 ggcgatattcaccaccaagtatcatcttcatgctgcactgtcttacagcctccatatccc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggcgatattcaccaccaagtatcatcttcatgctgcactgtcttacagcctccatatccc 800

                                                                       
Query: 601 agacttttaaatgccagggcaggtcactttttcctccaatccatgcaagtgatcttcttg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agacttttaaatgccagggcaggtcactttttcctccaatccatgcaagtgatcttcttg 860

                 
Query: 661 gatggc 666
           ||||||
Sbjct: 861 gatggc 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |