Query= MSMg01no520_m06.b1 MSMg01no520_m06.b1 CHROMAT_FILE:
MSMg01no520_m06.b1 PHD_FILE: MSMg01no520_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:54 2005
(638 letters)
>mm_chr17_87708889_87709934
Length = 1046
Score = 1166 bits (603), Expect = 0.0
Identities = 630/643 (97%), Gaps = 8/643 (1%)
Strand = Plus / Plus
Query: 4 ggaattcctgcaatatcccgctctcagcatccccagcatagagtggggagggagagag-- 61
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 204 ggaattcctgcaatatcccgctctcagcatccccagcatggagtggggagggagagagac 263
Query: 62 ----ag--agacaggcagacatagatctcccaggcaacatgcttgcctacatccatttca 115
|| ||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 264 agacagacagacaggcaaacatagatctcccaggcaacatgcttgcctacatccatctca 323
Query: 116 gctacttctacctccagggactggcctcacccagccatgctccggaatgtgagaaaggac 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gctacttctacctccagggactggcctcacccagccatgctccggaatgtgagaaaggac 383
Query: 176 tccacttccaggcagtgaggacagagttcagagcatccctcatcctgaaaaggatgtttg 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tccacttccaggcagtgaggacagagttcagagcatccctcatcctgaaaaggatgtttg 443
Query: 236 gttcaacagggttgctcttggatagaaactctgctgtgctggaggcccagggcactgaga 295
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 444 gttcaacagggttgctcttggatagaaactctgctgtgttggaggcccagggcacttaga 503
Query: 296 gcacccacacatccagatcaaataaggcctagagggctttacagctctttgcctcctcct 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcacccacacatccagatcaaataaggcctagagggctttacagctctttgcctcctcct 563
Query: 356 gaaggtctaccacaggctctgtttggcctcctgtttcgagtctgtctttcttctcattat 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaaggtctaccacaggctctgtttggcctcctgtttcgagtctgtctttcttctcattat 623
Query: 416 ttcttaagctttatttggccagaaccctctcccagagatgagctttctctgatgcctgtg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcttaagctttatttggccagaaccctctcccagagatgagctttctctgatgcctgtg 683
Query: 476 agtctctacccagggcccagctaaagccttcttccagctgcaggccacaggtcgatgttt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agtctctacccagggcccagctaaagccttcttccagctgcaggccacaggtcgatgttt 743
Query: 536 gtctgtgtccacccagccctgggttgacttcgggagtgatggactcacccaccttccctt 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtctgtgtccacccagccctgggttgacttcgggagtgatggactcacccaccttccctt 803
Query: 596 ccccgccaacagtggacaactttgagagaaagaaaggcagcca 638
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ccccgccaacagtggacaactttgagagaaagaaaggcagcca 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1046
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1036
Effective search space: 650608
Effective search space used: 650608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_m06.g1 MSMg01no520_m06.g1 CHROMAT_FILE:
MSMg01no520_m06.g1 PHD_FILE: MSMg01no520_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:54 2005
(675 letters)
>mm_chr17_87860784_87861859
Length = 1076
Score = 1268 bits (656), Expect = 0.0
Identities = 671/676 (99%), Gaps = 1/676 (0%)
Strand = Plus / Minus
Query: 1 tttgttgttgtttttgctttgttgtctcatgtagcccaggttggccacaaagtcactctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 tttgttgttgtttttgctttgttgtctcatgtagcccaggttggccacaaagtcactctg 971
Query: 61 catgtagtgtgagcatggcattaaccttctggtatttctgccccagcctgctaaacctgt 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 catgtagcgtgagcatggcattaaccttctggtatttctgccccagcctgctaaacctgt 911
Query: 121 gattataaaatgcataacgcaaccagacctggctgccatcagggaaatcttgctattgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 gattataaaatgcataacgcaaccagacctggctgccatcagggaaatcttgctattgct 851
Query: 181 tttgtattgtgttctgcaaatgaagtctaaggggacaacggaatcttgactttctgtggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 tttgtattgtgttctgcaaatgaagtctaaggggacaacggaatcttgactttctgtggt 791
Query: 241 cctgagtcaggatctactactccctgtcccctgatatcctgccttctgctaggcctctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 cctgagtcaggatctactactccctgtcccctgatatcctgccttctgctaggcctctct 731
Query: 301 cccttctcctatgttgtggtttctgccaccctccacttggggaggtgactgggggatagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 cccttctcctatgttgtggtttctgccaccctccacttggggaggtgactgggggatagc 671
Query: 361 agtggaagcgatctgtgttcctctcacctaggagtagagccacctctgcacatgtggctg 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 670 agtggaagcgatctgtgttcctctcacctaggggtagagccacctctgcacatgtggctg 611
Query: 421 gtaatgtgtgaatgccacctgtgagccacaggctggggaagaggggctctgggccagagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 610 gtaatgtgtgaatgccacctgtgagccacaggctggggaagaggggctctggggcagagg 551
Query: 481 tgactgtgtggtttctcattctacgtgggctccaaatcaccattttacaacagaacttct 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 550 tgactgtgtggtttctcattctacgtgggctccaaatcaccattttacaaaagaacttct 491
Query: 541 taaacagtgatcatctttgaagacc-gggatggggagtggtaggaaagaagaaggtttcc 599
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 490 taaacagtgatcatctttgaagaccggggatggggagtggtaggaaagaagaaggtttcc 431
Query: 600 tgtttaatctggtttttaaatatagctagcttggcacaagcaatgatgtttccccagtga 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgtttaatctggtttttaaatatagctagcttggcacaagcaatgatgtttccccagtga 371
Query: 660 agtggaaccagaaagg 675
||||||||||||||||
Sbjct: 370 agtggaaccagaaagg 355
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1076
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1066
Effective search space: 708890
Effective search space used: 708890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
