BAC Information

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BAC

Clone NameMSMg01-521M12
Chromosome17 (Build37)
Map Location 64,674,698 - 64,675,202
singlet/doubletsinglet
Overlap genePja2
Upstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2, LOC669778
Downstream geneLOC100043582, Man2a1, 4930583I09Rik, LOC100043871, E130009J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521M12.T7 (MSMg01no521_m12.b1)MSMg01-521M12.TJ (MSMg01no521_m12.g1)
ACCAG592496AG592497
length746744
length of high quality
(start - end)
502 (54 - 555)81 (323 - 403)
definitionCHROMAT_FILE: MSMg01no521_m12.b1 PHD_FILE: MSMg01no521_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:13 2005CHROMAT_FILE: MSMg01no521_m12.g1 PHD_FILE: MSMg01no521_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCACTTTCGTCTTTGACTCTCAGTTGACTCTGGATTATTAACATT
CATATGTTCTCTTTTGGAATATTGTTTATATTTTATTTCTGGTGTCTTAT
TCTACATTAAATGCCTTTTCTTTATGCTTCTGTTCCTTATGTGTTTCTAT
GTATTATATCCTGAATATTTTCTTATTGTCTGGCTTCTATTGTGTTGACT
TTCTTTTCAGCTACTTCTGAACTTTTTTAGTAGTGTGTTCTAGCTTTTAA
AGTTCTGTCTTTTTTCTTTCTGATTTCTATTTAGCTTTATTTAAGTGTTA
GCTTTTATACAGACTCTTAAATATGTGGTCCTTCTAGTCATTCCCCAGTC
CTGTCCCATTCTGTAGTACTTGCTACCTTTATTCCTTATGTAGTCTCTTG
TATGTCTGGGGGTGGGATGAAATTATATGTGAAAATTCCGACCTGGTTGA
AAGAAAAGAAAGTGACTTTCTTTCACTATAGAGGAAATTTCACCTGTTTC
TGTGAGGTGTTTGGCTTACTGTTCTCATGCTAGCAGTATTCTCAGCTTGT
TATTTGAGGATTCAGCAGATCATATGAATTGCAACTCCTGAGCTAGATGA
AGTTGACCTTACAACTGAATTTGTATGCAAGTCACCCTTCTTTTTCCCAG
CCATCTACTTTCTCACCCCAAGCTAAGATATTTTTATGTTCTTTTA
TCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCATATAGATCCATATCTATCACCTGTAC
AAACTCAAGTCCACATGACAAAAGACTTCAACAAAAATCAGATACACTAA
AATGATAGAAAAATAAGTGGGAGATAGCCTTGAACTCATTGGCACAGGAG
GCAACCTCTTGAACAGAACAGCAGGAGCTCAGGTGCTAAGGTCAACAATT
AATAAGTGGGGTCTCATGAGACTAGAAAGCTTTTACAAGTCAAAGGACAC
TGTGAAAGGGACAAAACAACAACCTATAGATTGGGAAACTATCTTCACCA
ACCCTATATCTGACAGAGGGCTAATATCCAAAATATATAAAGAATTCAAG
AAGTTAGACACCAACAACTCAAATAGCCCAATTAAAAATGGGGTACAGAG
CTAAACAGAATTCTCAACAAAGGAATCTTCAAATGGCTGAGAAGCACTTA
AAGAAATGTTCAGTGTCCCTAGTCATCAGAAAAATACAAATCAAAATAAC
TCTGAGATTTCACCATATACCCATCTGAATGACTAATATTTTAAACTTAA
TGGACAGCACATGCTGGCAAGGATGTGTAGCAAATGGGATACTCTTTCCT
TGCTGGTGAGAGTGCTTACTTGTTAAGCTACTTTGGATATCTACATGGCT
GATTTCCCATAAAATTTGGAATATATCTACCTCAAGGGCAAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_m12.b1 MSMg01no521_m12.b1 CHROMAT_FILE:
MSMg01no521_m12.b1 PHD_FILE: MSMg01no521_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:13 2005
         (502 letters)



>mm_chr17_64674698_64675599
          Length = 902

 Score =  694 bits (359), Expect = 0.0
 Identities = 438/505 (86%), Gaps = 62/505 (12%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcactttcgtctttgactctcagttgactctggattattaacattcatatgttctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attcactttcgtctttgactctcagttgactctggattattaacattcatatgttctctt 446

                                                                       
Query: 61  ttggaatattgtttatattttatttctggtgtcttattctacattaaatgccttttcttt 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 ttggaatattgtttatattttatttctggtttcttattctacattaaatgccttttcttt 386

                                                                       
Query: 121 atgcttctgttccttatgtgtttctatgtattatatcctgaatattttcttattgtctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgcttctgttccttatgtgtttctatgtattatatcctgaatattttcttattgtctgg 326

                                                                       
Query: 181 cttctattgtgttgactttcttttcagctacttctgaacttttttagtagtgtgttctag 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 cttctattgtgttgactttcttttcagctacttctgaacttttttactagtgtgttctag 266

                                                                       
Query: 241 cttttaaagttctgtcttttttctttctgatttctatttagc------------------ 282
           ||||||||||||||||||||||||||||||||||||||||||                  
Sbjct: 265 cttttaaagttctgtcttttttctttctgatttctatttagctttatttaagtgttagct 206

                                                                       
Query: 283 --------------------------------------------tttatttaagtgttag 298
                                                       ||||||||||||||||
Sbjct: 205 tttattttatttaatttattattaatttattttatttattttattttatttaagtgttag 146

                                                                       
Query: 299 cttttatacagactcttaaatatgtggtccttctagtcattccccagtcctgtcccattc 358
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 145 cttttatacagactcttaaatatgtggtccttctagtcattccccagccctgtcccattc 86

                                                                       
Query: 359 tgtagtacttgctacctttattccttatgtagtctcttgtatgtctgggggtgggatgaa 418
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 85  tgtagtacttgctacctttattccttaggtagtctcttgtatgtctgggggtggggtgaa 26

                                    
Query: 419 attatatgtgaaaattccgacctgg 443
           |||||||||||||||||||||||||
Sbjct: 25  attatatgtgaaaattccgacctgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)