Query= MSMg01no521_p15.b1 MSMg01no521_p15.b1 CHROMAT_FILE:
MSMg01no521_p15.b1 PHD_FILE: MSMg01no521_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:27 2005
(697 letters)
>mm_chr17_53198300_53199396
Length = 1097
Score = 1278 bits (661), Expect = 0.0
Identities = 685/693 (98%)
Strand = Plus / Minus
Query: 5 gaattcttagctgttatgattgcttgatcctatgaccttcagaatgagttgcctcttgga 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 897 gaattcttagctgttatgattgcttgatcctgtgaccttcagaatgagttgcctcttgga 838
Query: 65 cttctgggacagggacaggtgaagacaagtgtctttctgagtttacttagaggaagcctg 124
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 837 cttctgggacagggacaggtgaagacaggcgtctttctgagtttacttagaggaagcctg 778
Query: 125 ttcccatacaaaaaacttctgcagccaaaattgataagcacggtcttatgaacctctgag 184
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 777 ttcccatacagaaaacttctgcagccaaaattgataagcacagtcttatgaacctctgag 718
Query: 185 ttcatattccttcaggaggtctgtattatcctcttagagttaaaaaacatacaagtgata 244
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 717 ttcatattccttcaggaggtctgtattatccttttagagttaaaaaacatacaagtgata 658
Query: 245 cctttcatgaagtgatgattgtaatggccatttcatcaatgacagagttgatggattctg 304
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 657 cctttcatgaagtgatgattgtaatgaccatttcatcaatgacagagttgatggattctg 598
Query: 305 tcagaattcattaccttttaggctacccagatgacccaagtgtctaattcagtcatagtt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tcagaattcattaccttttaggctacccagatgacccaagtgtctaattcagtcatagtt 538
Query: 365 gtgtccatcatgggcaatgtaaatgtaaagcaaacactttgccctgatgacaccataaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gtgtccatcatgggcaatgtaaatgtaaagcaaacactttgccctgatgacaccataaat 478
Query: 425 atgcatatgataacccacaatgagataaaccaaagataataaggtcaccctgtctagttc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 atgcatatgataacccacaatgagataaaccaaagataataaggtcaccctgtctagttc 418
Query: 485 tagcctttaaaataaatgaaacattggacatttattcacagttacttcttagcaaaacaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tagcctttaaaataaatgaaacattggacatttattcacagttacttcttagcaaaacaa 358
Query: 545 ataaagcctagatgttcacaaagctgatttctgaagacatagactattctttgtggacag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ataaagcctagatgttcacaaagctgatttctgaagacatagactattctttgtggacag 298
Query: 605 aataataatggagaagttattttccgggccatggataggtttagctatggaaccttgaca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aataataatggagaagttattttccgggccatggataggtttagctatggaaccttgaca 238
Query: 665 attttaccacctccatccttatagtttagcttt 697
|||| ||||||||||||||||||||||||||||
Sbjct: 237 atttcaccacctccatccttatagtttagcttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space: 746769
Effective search space used: 746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_p15.g1 MSMg01no521_p15.g1 CHROMAT_FILE:
MSMg01no521_p15.g1 PHD_FILE: MSMg01no521_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:28 2005
(566 letters)
>mm_chr17_53009486_53010449
Length = 964
Score = 928 bits (480), Expect = 0.0
Identities = 539/568 (94%), Gaps = 18/568 (3%)
Strand = Plus / Plus
Query: 1 ctaaggagcagaatttagtaccaaacactgcacaagacagagagagagagagagagagag 60
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 211 ctaaggagcagaattcagtaccaaacactgcacaagac------agagagagagagagag 264
Query: 61 agagagagagagagagagagagagagagagagagagagagagagagagagaaaacctgta 120
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 265 agagagagagagagagagagagagagagagagagagagagagagagaga----acctgta 320
Query: 121 gtaggaaataaaccactgtgctaatgcttttgatttcagtaactccctcccctccacata 180
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 gcaggaaataaaccactgtgctaatgcttttgatttcagtaactccctcccctccacaca 380
Query: 181 catgtgcacaaagaaacttgcacacattccaatcttgaacccttttctcaatatacctca 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 catgtgcacaaagaaacttgcacacattccgatcttgaacccttttctcaatatacctca 440
Query: 241 ctcccttctgaattctgcatggtttctgtcagcactcagcccctttttaggaagtctgag 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcccttctgaattcttcatggtttctgtcagcactcagcccctttttaggaagtctgag 500
Query: 301 agggtgacagcccatgtgctgttctcagtcagggtcacagacattattccagttccagac 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 agggtgacagcccatgtgctgttctcagtcagggtcacagacattgttccagttcc---- 556
Query: 361 ctttctgtcattctgtaacctacctttttttctgatcccaagaatcacaatgtacttct- 419
| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 -tctctgtcagccagtaacctacctttttttctgatcccaagaatcacaatgtacttctt 615
Query: 420 --aatgagttacaaagggagttagtaggtcctcagaaggaaaagaggggagaaatttgaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ctaatgagttacaaagggagttagtaggtcctcagaaggaaaagaggggagaaatttgaa 675
Query: 478 ttacaatgctgggttccttttcattaatcaatttatttattcactttataccccaattac 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttacaatgctgggttccttttcattaatcaatttatttattcactttataccccaattac 735
Query: 538 agacctcatctctcccctcctcccagtc 565
||||||||| ||||||||||||||||||
Sbjct: 736 agacctcatttctcccctcctcccagtc 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 121
Number of extensions: 43
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 964
Length adjustment: 10
Effective length of query: 556
Effective length of database: 954
Effective search space: 530424
Effective search space used: 530424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
