BAC Information

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BAC

Clone NameMSMg01-522D22
Chromosome17 (Build37)
Map Location 10,320,775 - 10,481,679
singlet/doubletdoublet
Overlap geneQk
Upstream geneEG667170, LOC666143, 4932702K14Rik
Downstream geneLOC675815, Pacrg, Park2, LOC100041113
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522D22.T7 (MSMg01no522_d22.b1)MSMg01-522D22.TJ (MSMg01no522_d22.g1)
ACCAG592850AG592851
length771776
length of high quality
(start - end)		552 (52 - 603)552 (83 - 634)
definitionCHROMAT_FILE: MSMg01no522_d22.b1 PHD_FILE: MSMg01no522_d22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:48 2005CHROMAT_FILE: MSMg01no522_d22.g1 PHD_FILE: MSMg01no522_d22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,320,775 - 10,321,322)(10,481,128 - 10,481,679)
sequence
NNNTTTTCCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATCAAAGAGTCTACAATCTAGAGAAGCCCTCAATGTGA
CTTTGTGTGCTGGGACTGAGGGAAGGCAGTGTATGCACATGTGTGAACAG
GTGCCCACACTCAGCCATGTGAAGGCCATCAAGAATCTTTCTCTCTCACT
TGTTTTTCTTCTTACCTACTAAGCCATCTATCTGCCCAACCCCCTTGGGT
ATAATTTGTGAGGATTACCAAGCCAAGGATTTCTGGGGCCTTCACAACCC
CTTCCCACCCAGGCTCTCCATCTCAGTGTTCCACTATAAGACTGCCTGTG
GCTAACATCTGCTTAGCACCTCACTCCCAGGATCGAGTTCATCTCATCAT
TATTTTATCCCTGCCCTGGGCAGTGCTTGTCTACATTTCAATGTCAACTG
AGCCCTTGGCAGTGTCAAGAGGTGAAAGCTTCCAGACAAGATGGAGACTG
GCCTTATAACCCTTCAGTTCTCAGCCATGGCTGTCACTCAGAGCACAAAC
ATCTGTCCATCACCCAGACACAATGTCTTCCTCATTAGGCTTTTTATCTT
GAGAAAAGACAGAAGTACTTAAAGTATTTATTTATTTTTTTGCTCCTGAA
GATGGGTGGAATTTCAATTTCCTCTAGAGAGCCATTGGGCCCGTTTATAA
GTGGATGACTTGTCTCCACAGNTTGCACTCCAGCAAAAGTCATCTCAGTC
CCTTTGTCACAGAGGATTCCC

NNTTTTTTCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTGTTAAGATTTTAAA
TATTAAACCCTTAGTTTGCTGTTTGTGTTGGCTATGTTGCAGTAATACCC
ATCAAAAGGTTACTTGCAGATAGAAAATAATAGAATCTATTTGTGTTGAA
AGCTGAAAACATATTAACATTTTAAAACCTGATTATAATTAAAGCATGTA
TTTATAAAATATTGGCTATTAATTTACTCAAATCAATGAAAACTGTTAAT
TTAAAAACTGAGATGGTCATGATCAAGTAAATTATAATCTTTTCATACCT
TTCTATATTTCTGTGTATTTAGGTATATTATGTTAATGTATATCTTGATG
TATTTGTGATGCATAAAGAAAAAGTATATAGCTGCCCAGATAAAATGTCT
TAATGTTAGTATGTCCAGTTGAGCTATTAGAATCAGTTACCACAACAGAG
TGTAAAAGACATGCTTTATTTGGAAAAACAAAACAAAAACCCCAATATTT
TATAAACTTTAAAAAATGGCATTAGTTTTTAAGTCCTGAAACTTTAATGC
ATTTTGTTTTTCTGTGTGCCATTAATTGCTTTGTTAATAATTATTAGCTA
GTACATACTCTCATAGTTTTCTAAGTTTTAATTTGTTGAAAACTCTNCAT
CAGAAAGTTAGAGCTGTTTTTATTTTATTGGGTCTTCTAGTATCGCGTTA
CTGAATCTATACATTTATGACTAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_d22.b1 MSMg01no522_d22.b1 CHROMAT_FILE:
MSMg01no522_d22.b1 PHD_FILE: MSMg01no522_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:48 2005
         (552 letters)



>mm_chr17_10320571_10321522
          Length = 952

 Score = 1052 bits (544), Expect = 0.0
 Identities = 547/548 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatcaaagagtctacaatctagagaagccctcaatgtgactttgtgtgctggga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcaaagagtctacaatctagagaagccctcaatgtgactttgtgtgctggga 264

                                                                       
Query: 65  ctgagggaaggcagtgtatgcacatgtgtgaacaggtgcccacactcagccatgtgaagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgagggaaggcagtgtatgcacatgtgtgaacaggtgcccacactcagccatgtgaagg 324

                                                                       
Query: 125 ccatcaagaatctttctctctcacttgtttttcttcttacctactaagccatctatctgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccatcaagaatctttctctctcacttgtttttcttcttacctactaagccatctatctgc 384

                                                                       
Query: 185 ccaacccccttgggtataatttgtgaggattaccaagccaaggatttctggggccttcac 244
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 ccaacccccttgggtataatttgtgaggattaccaagccgaggatttctggggccttcac 444

                                                                       
Query: 245 aaccccttcccacccaggctctccatctcagtgttccactataagactgcctgtggctaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaccccttcccacccaggctctccatctcagtgttccactataagactgcctgtggctaa 504

                                                                       
Query: 305 catctgcttagcacctcactcccaggatcgagttcatctcatcattattttatccctgcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catctgcttagcacctcactcccaggatcgagttcatctcatcattattttatccctgcc 564

                                                                       
Query: 365 ctgggcagtgcttgtctacatttcaatgtcaactgagcccttggcagtgtcaagaggtga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgggcagtgcttgtctacatttcaatgtcaactgagcccttggcagtgtcaagaggtga 624

                                                                       
Query: 425 aagcttccagacaagatggagactggccttataacccttcagttctcagccatggctgtc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagcttccagacaagatggagactggccttataacccttcagttctcagccatggctgtc 684

                                                                       
Query: 485 actcagagcacaaacatctgtccatcacccagacacaatgtcttcctcattaggcttttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 actcagagcacaaacatctgtccatcacccagacacaatgtcttcctcattaggcttttt 744

                   
Query: 545 atcttgag 552
           ||||||||
Sbjct: 745 atcttgag 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no522_d22.g1 MSMg01no522_d22.g1 CHROMAT_FILE:
MSMg01no522_d22.g1 PHD_FILE: MSMg01no522_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:48 2005
         (552 letters)



>mm_chr17_10480928_10481879
          Length = 952

 Score = 1060 bits (548), Expect = 0.0
 Identities = 551/552 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgttaagattttaaatattaaacccttagtttgctgtttgtgttggctatgttgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 acttgttaagattttaaatattaaacccttagtttgctgtttgtgttggctatgttgcag 693

                                                                       
Query: 61  taatacccatcaaaaggttacttgcagatagaaaataatagaatctatttgtgttgaaag 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 692 taatacccatcaaaaggttaattgcagatagaaaataatagaatctatttgtgttgaaag 633

                                                                       
Query: 121 ctgaaaacatattaacattttaaaacctgattataattaaagcatgtatttataaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ctgaaaacatattaacattttaaaacctgattataattaaagcatgtatttataaaatat 573

                                                                       
Query: 181 tggctattaatttactcaaatcaatgaaaactgttaatttaaaaactgagatggtcatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tggctattaatttactcaaatcaatgaaaactgttaatttaaaaactgagatggtcatga 513

                                                                       
Query: 241 tcaagtaaattataatcttttcatacctttctatatttctgtgtatttaggtatattatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tcaagtaaattataatcttttcatacctttctatatttctgtgtatttaggtatattatg 453

                                                                       
Query: 301 ttaatgtatatcttgatgtatttgtgatgcataaagaaaaagtatatagctgcccagata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttaatgtatatcttgatgtatttgtgatgcataaagaaaaagtatatagctgcccagata 393

                                                                       
Query: 361 aaatgtcttaatgttagtatgtccagttgagctattagaatcagttaccacaacagagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aaatgtcttaatgttagtatgtccagttgagctattagaatcagttaccacaacagagtg 333

                                                                       
Query: 421 taaaagacatgctttatttggaaaaacaaaacaaaaaccccaatattttataaactttaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 taaaagacatgctttatttggaaaaacaaaacaaaaaccccaatattttataaactttaa 273

                                                                       
Query: 481 aaaatggcattagtttttaagtcctgaaactttaatgcattttgtttttctgtgtgccat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaatggcattagtttttaagtcctgaaactttaatgcattttgtttttctgtgtgccat 213

                       
Query: 541 taattgctttgt 552
           ||||||||||||
Sbjct: 212 taattgctttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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