BAC Information

Click to search

BAC

Clone NameMSMg01-522H04
Chromosome17 (Build37)
Map Location 72,001,641 - 72,001,875
singlet/doubletsinglet
Overlap geneWdr43
Upstream geneDlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451
Downstream gene4632412N22Rik, BC027072, Clip4, Alk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522H04.T7 (MSMg01no522_h04.b1)MSMg01-522H04.TJ (MSMg01no522_h04.g1)
ACCAG593003AG593004
length822570
length of high quality
(start - end)
---236 (104 - 339)
definitionCHROMAT_FILE: MSMg01no522_h04.b1 PHD_FILE: MSMg01no522_h04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:03 2005CHROMAT_FILE: MSMg01no522_h04.g1 PHD_FILE: MSMg01no522_h04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCCCCCCCCCCTCCCNNNNNNNNNNNNCCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTTGGTTGTCCCGNCTCGCCNNNNNNNNNCTCGTTTCCGC
TCTTCCGCCGGNCCCCNNNNCCCCCGGNTTTTGTTGGAGGGTGTGTGGGT
NNNNNNNTTTGGTTTGTTTTTTTGCCGTGTCTCCCCNCCNNNNTNAGAAC
NCCCCCTNTTCNTNTCCNCCCCCCNTCTCTTTTTGNTTGTTGTCGNTGTT
TTTTTCCCNNNNNGTCCCCCCCCGGGATTTTCTCCCCCCCCNNNNTTTTT
NTCCCCTCCCNTGTGGCCCCCGNTGAACCCCCCTCTTTAAGTGNTTGTTT
TCTTCAGGCCCCTCCTCTTTCCCCCCCCCGGGGGGGTGGTCCCCCCTCNC
CCGTGTGTGCCCCCCCCCGCTGTTTNCTTCCCCCACCGCGCGNCTCGCGT
GTTTTTNGGTGTGGGNGCTGTTTNTCNTGTCNCGCGCTCTCCGCGCTCCC
CTCTNATNNNNNNTTTNTCCTNCTTNCCCCCCCCTTTATTTGTGGTGNTG
GNGNNGTGTCTTTCTGCGTNNTTGTATCACAACCCCCCTCCCCCCCCCCC
CCCCCCTGGTGGGGGNNNNNNTTAATTATAAAAATAAATCAAANNNTGGT
GCCCCTCCTCCTCCCCCCCCCCGTNTTNTGNGGGGGGGGGGGTGGTGGGT
GTGGCCCGCCCCCCCTTTTATTTTCCCNAANANTGTTGGGCGCTTGAACN
NCCTCTCCCCCCCCCCCCCTTTCTCNNCTCCTNTCNNNACGCCCGGCGCA
CTCCGGTCTCTCCCGCGCGCGG
NTTCTTTNNNNNNNNNNNNNNNNNNNNCCTATGCTXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTCAGTGTGATTGATGGGATTCATTAATAGGAGTGGTATGTGCAGTG
TGGTATGTGAGGTTCACCTTGTCCTCCATGGCTCTGTCCTGACAGCTGGG
AGGAGTGCCTGGCTCTTCAGAGCCTATGGCAAGCGTAGATGATGCGCTGG
GTACTGACCGAGCAAGAGTCAGGAAAGGCCCTTAAGGGATGTGTAGTGAA
GTATTTTTTATATNCTATCCTCTGTTGACCTTATCTGAAATAATTGACAA
TGTATGAGATTTCATGCTGCCACCTGCTCTACTTAAGGTTTTGTGTGTTT
TGAGTTGATTTTCTTGCCAGGAATAAACCCAGGGCTTTTCTTTGAAAAAT
TTTGTTTGTTTGCTTGGGGCCTTGGTTCCCAAAACCCCCCTTTTGTTTGG
CTTTAAAAATTTTTGGGGAAACCCCCCCTGGTTTTTTTTGGTTAAAAGGG
GGCTTTGGGGCCCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_h04.g1 MSMg01no522_h04.g1 CHROMAT_FILE:
MSMg01no522_h04.g1 PHD_FILE: MSMg01no522_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:03 2005
         (236 letters)



>mm_chr17_72001441_72002075
          Length = 635

 Score =  418 bits (216), Expect = e-121
 Identities = 231/236 (97%), Gaps = 1/236 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagtgtgattgatgggattcattaataggagtggtatgtgcagtgtggtatgtgaggt 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 ttcagtgtgattgatgggattcattaataggagtggtgtgtgcagtgtggtatgtgaggt 260

                                                                       
Query: 61  tcaccttgtcctccatggctctgtcctgacagctgggaggagtgcctggctcttcagagc 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tcaccttgtcctccatggctctgtcctgacagctaggaggagtgcctggctcttcagagc 320

                                                                       
Query: 121 ctatggcaagcgtagatgatgcgctgggtactgaccgagcaagagtcaggaaaggccctt 180
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 321 ctatggcaagcgtagatgatgcgctgggttccgaccgagcaagagtcaggaaaggccctt 380

                                                                   
Query: 181 aagggatgtgtagtgaagtattttttatatnctatcctctgttgaccttatctgaa 236
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 aagggatgtgtagtgaagtattttttatat-ctatcctctgttgaccttatctgaa 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 635
Length adjustment: 9
Effective length of query: 227
Effective length of database: 626
Effective search space:   142102
Effective search space used:   142102
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)