NNNNNNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTTCATATGCTTGCCCCAGAGAAGCAGCATCTGACTT
TCCAAAGAACCCTTAGGTTTCCACTTCACAGATTACATTACACAACATTT
AGCATATTAGTAACTTTAATTCCTTTTTTTTTTTTTGAGACAGGGTTTCT
CTGTAGCCCTAGCTGTCCTGGAACTCACTTTGTAGACCAGGTTGGCCTTG
AACTCAGAAATCTGCCTGCCTCAGCCTCCTAAGTGCTGGGATTAAAGACG
TGAGCCACCACACCCGGCTTTAAACATTTTTTTTTAATTCCTTTTCCAAC
ATATCAAAACAACTTGCCTGGCAAATACAGAAGTGGATGTTCACAGTCAT
CTATTGGATGGATCACAGGGCCCCCAGTGGAGGAGCTAGAGAAAGTACCC
AAGGAGCTGAAGGGGATTGCAACCCTATAGATAGAACAACAATATGAACT
ACCCAGTACCCCAGAACTAGTGTCTCTAGCCACATATGTAGTGGAAAGAG
AGGTCCCTTGGTCTTGCAAACTTTATATGCCCCGAACACAGGGGGAATGC
CAGGGCCAANAAAATGGAANGAGNGGGTAAGGGAAAAAAAAAAGGGGAAG
GGAAAGGGAAATTTTGGGGAAAGGATTTGAATTTTAATGGGAGATATATT
TTATAAAATTAGTTTAAAAATTTTTAATAGTTTTGTTTTATTAAATTAAA
AGGGTATGCCTTTT

AAAACCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGATACTTAAGCCTGT
TCAAATACCCAATACTGAAGATTATGTGGGGTCAGGAGGAAGCTACTACT
GATGTTTTGCTAAATGATGTTTTCAAACTGCCTTCATATATATGTGTATA
CACATTTGTGCTATTGTGACGCCTTTCACATCAGTCTTAGCATCTCCTTT
CTAATGTAAGCAGTGGTTAACACGGGTCATGAACATATGAAGGGAAATTG
TGCATGTTTTCTCTCTCTCTTGCTCATATATACAAATACAACTCTCACAC
ATACACATACAAACACAGAGAAATACAGGCATACACAGAGAGAGAGGGGG
GAGGGAGGGAGGGAGAGAGAAACATAAATAAATGTGAAATATAAAATAAA
TTGTGTTTTCACAAGCAAATGTACAAGAAACTCGTTGTAATGAAGACTGA
ATGATAAGAGATCAGTATGTGAATACTAAGTAACTGCATGCTTATGTGTA
ACAGCAGGTTTTTATGAGATAGTCATGTATATGTATTGGTGCTTTGCAAC
TCTTTAAGCAGATTAAAAATTAAACATTTTACCATTATTCCTTTTAAATG
CACATATGATGGGATTTTTAGTAGTTTTCAAATTCTTTTTTGGGGGCAAG
TCAGNCTTTCTTTCTTTATTAATTTATTATTTTTTATGGGGC

Query= MSMg01no522_k16.g1 MSMg01no522_k16.g1 CHROMAT_FILE:
MSMg01no522_k16.g1 PHD_FILE: MSMg01no522_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:19 2005
         (518 letters)



>mm_chr17_59657713_59658630
          Length = 918

 Score =  959 bits (496), Expect = 0.0
 Identities = 509/518 (98%), Gaps = 8/518 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatacttaagcctgttcaaatacccaatactgaagattatgtggggtcaggaggaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgatacttaagcctgttcaaatacccaatactgaagattatgtggggtcaggaggaagc 260

                                                                       
Query: 61  tactactgatgttttgctaaatgatgttttcaaactgccttcatatatatgtgtatacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactactgatgttttgctaaatgatgttttcaaactgccttcatatatatgtgtatacac 320

                                                                       
Query: 121 atttgtgctattgtgacgcctttcacatcagtcttagcatctcctttctaatgtaagcag 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 atttgtgctattgtgacgcctttcacatcagtctgagcatctcctttctaatgtaagcag 380

                                                                       
Query: 181 tggttaacacgggtcatgaacatatgaagggaaattgtgcatgttttctctctctcttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggttaacacgggtcatgaacatatgaagggaaattgtgcatgttttctctctctcttgc 440

                                                                       
Query: 241 tcatatatacaaatacaactctcacacatacacatacaaacacagagaaatacaggcata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatatatacaaatacaactctcacacatacacatacaaacacagagaaatacaggcata 500

                                                                       
Query: 301 cacagagagagaggggggagggagggagggagagagaaacataaataaatgtgaaatata 360
           ||||||||||||||||||||||||||||        ||||||||||||||||||||||||
Sbjct: 501 cacagagagagaggggggagggagggag--------aaacataaataaatgtgaaatata 552

                                                                       
Query: 361 aaataaattgtgttttcacaagcaaatgtacaagaaactcgttgtaatgaagactgaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aaataaattgtgttttcacaagcaaatgtacaagaaactcgttgtaatgaagactgaatg 612

                                                                       
Query: 421 ataagagatcagtatgtgaatactaagtaactgcatgcttatgtgtaacagcaggttttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ataagagatcagtatgtgaatactaagtaactgcatgcttatgtgtaacagcaggttttt 672

                                                 
Query: 481 atgagatagtcatgtatatgtattggtgctttgcaact 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atgagatagtcatgtatatgtattggtgctttgcaact 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)