BAC Information

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BAC

Clone NameMSMg01-522O05
Chromosome17 (Build37)
Map Location 21,822,077 - 21,822,722
singlet/doubletsinglet
Overlap genenone
Upstream geneV1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807
Downstream geneZfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522O05.T7 (MSMg01no522_o05.b1)MSMg01-522O05.TJ (MSMg01no522_o05.g1)
ACCAG593339AG593340
length756761
length of high quality
(start - end)		655 (69 - 723)550 (79 - 628)
definitionCHROMAT_FILE: MSMg01no522_o05.b1 PHD_FILE: MSMg01no522_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:37 2005CHROMAT_FILE: MSMg01no522_o05.g1 PHD_FILE: MSMg01no522_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:37 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NACTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATCAGAAGCTTTGGAGCTAGAAACTTCCTATGAGAGAGAAG
ATGCAATGCCTGTCTTTCTGGGTCTGGGTTACTCCACTGACTGTTACCTT
TTATTAGGCCACCTATTTACCTGCAACACTCATGACTTTAATTTTCTTTA
CAGCTCAATAATATTCCATAGTGTACATGCACCACATTTTCACTTTCCAT
TTGTCCATTGAAGGCCATTTACGTTGTTTCCCTTTTTAAAGTTATTGTGA
GTAGAGCAGCAGTGAACATCTGTGGAGTAGGACATTGATTCCCTTGAACA
TATGCGAAGGAGTAGAAGAGCTATGTCACATGCTAGATTTATATAACTTG
AAGATTTGTTTATTTAATTGAAGTTTGTCCATATTGATACCCACAGTGGC
TACATTTTTTGTTCATGGGAGTTTTATTCCTCATGCTTATTGTTGTTTAT
TATTTATTTATTTATGTTGTTCTTGGTAGGATTATGGGTACTATTATTCT
TTCTCTGTGGGAACTAGTATTTTTGCTATTTTGCTTATGGATGATTACTT
CCTAGTTCTCCCATATTTATCGATTTTCCATATAAAATTTATTATTCCCA
TGTTTTCATGGCTACTCATCTATTTCCTTTGTGCATATTTTCCTGTAATT
TATTATATACTAAGCTGCATTAGTGAAATGAATTGTGTTAATTTGGACTA
TCTTGA

NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGTCTGTTTTCTCAGTCAAT
AAATCTCTCATCTGTTGCCACAATATAAAAGCACTGTCAGGAACGTTCCT
GGATAAATTTTCCTCGTGAAACTTCCTCATATCCTTTTTTACTCGCTTCC
AATCTTCTAGTGTCAAGCTTCCCTCCTCTGGAAACCAGGGACTGATTTTT
TGCACGAAATCATAAAATTCTTGTAAAGATTTATCCGAGATTTTTAGGCC
TCTTCCAGACAGCATGTGTTTAAACACTGACAGGAACAATTTTTTCCCTT
TTGATTCTGATTGCCCCATGATAAATACTTACCCGTCTTTATAACGAACA
CGCCAGTCCGCCTGCCTGCAGCGCAGTCCCACGGGATCCTATCTTTGCCT
GAGAAAATAAAGAATAGAAAGAAAAAAAGAAAGAAAAGAAAAGACTAATC
TGCCCAGTTGTCCCTGTTCGAAGGCGCCAACTGCCACAGACACTCTGGGT
CCCTGGTCTGTGAAGAACGGGATTTCTTAGGCAGATGGACAAAGAGTTTG
GATGAAAATGACAGACAGATACACGAAAGATGTGTTGAATCTGAATGTAA
TGTTCTGGTTGAGCTTCAGACTTATATAACAACGAATTATCAGAGGATAC
AAATCACAAAAAGACAAGATACACTGAAATTCACCAGTTACAGCAGATAG
GAAATTACAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_o05.b1 MSMg01no522_o05.b1 CHROMAT_FILE:
MSMg01no522_o05.b1 PHD_FILE: MSMg01no522_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:37 2005
         (655 letters)



>mm_chr17_21821872_21822922
          Length = 1051

 Score = 1116 bits (577), Expect = 0.0
 Identities = 632/653 (96%), Gaps = 8/653 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggagctagaaacttcctatgagagagaagatgcaatgcctgtctttctgggtctgggtta 63
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 206 ggagctagaaacttcctatgagagagaagatgcaatgcctgcctttctgggtctgggtta 265

                                                                       
Query: 64  ctccactgactgttaccttttattaggccacctatttacctgcaacactcatgactttaa 123
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 266 ctccactgactgtgatcttttattaggccacctatttacctgcaacactcatgact--aa 323

                                                                       
Query: 124 ttttctttacagctcaataatattccatagtgtacatgcaccacattttcactttccatt 183
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 324 ttttctttacagctcaataatattccatagtgtatatgcaccacattttcactctccatt 383

                                                                       
Query: 184 tgtccattgaaggccatttacgttgtttccctttttaaagttattgtgagtagagcagca 243
           |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 tgtccattgaaggccatttatgttgtttccctttttaaagctattgtgagtagagcagca 443

                                                                       
Query: 244 gtgaacatctgtggagtaggacattgattcccttgaacatatgcgaaggagtagaagagc 303
           |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 444 gtgaacatctgtggagtaggacatggattcccttgaacctatgcgaaggagtagaagagc 503

                                                                       
Query: 304 tatgtcacatgctagatttatataacttgaagatttgtttatttaattgaagtttgtcca 363
           ||||||||||||||||||||| |||||||| ||||||||||||||||||  |||||||||
Sbjct: 504 tatgtcacatgctagatttatttaacttgaggatttgtttatttaattg--gtttgtcca 561

                                                                       
Query: 364 tattgatacccacagtggctacattttttgttcatggg-agttttattcctcatgcttat 422
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 562 tattgatacccacagtggctacattttttgttcatggggagttttattcctcatgcttat 621

                                                                       
Query: 423 tgttgtttattatttatttatttatgttgttcttggtaggattatgggtactattattct 482
           |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 622 tgttgtttattatttatttatttatgttgtt---ggtaggattatgggtactattattct 678

                                                                       
Query: 483 ttctctgtgggaactagtatttttgctattttgcttatggatgattacttcctagttctc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttctctgtgggaactagtatttttgctattttgcttatggatgattacttcctagttctc 738

                                                                       
Query: 543 ccatatttatcgattttccatataaaatttattattcccatgttttcatggctactcatc 602
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 739 ccatatttatcgattttccatataaaatttattattcccatgttttcatggctattcatc 798

                                                                
Query: 603 tatttcctttgtgcatattttcctgtaatttattatatactaagctgcattag 655
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 799 tatttcctttgtgcatattttcctgtaatttattatatactaggctgcattag 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1051
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1041
Effective search space:   671445
Effective search space used:   671445
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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