BAC Information

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BAC

Clone NameMSMg01-524K05
Chromosome17 (Build37)
Map Location 28,898,522 - 29,089,950
singlet/doubletdoublet
Overlap geneMapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1
Upstream geneD17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318
Downstream geneKctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524K05.T7 (MSMg01no524_k05.b1)MSMg01-524K05.TJ (MSMg01no524_k05.g1)
ACCAG594667AG594668
length755763
length of high quality
(start - end)		618 (38 - 655)656 (66 - 721)
definitionCHROMAT_FILE: MSMg01no524_k05.b1 PHD_FILE: MSMg01no524_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:58 2005CHROMAT_FILE: MSMg01no524_k05.g1 PHD_FILE: MSMg01no524_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,898,522 - 28,899,133)(29,089,296 - 29,089,950)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGC
TGTAAGATTGCCTTTGAAAGATTCCTAAGTCTGGAGAAATGGCTCAGTGG
TTAAGAGCACCGGTTGCTCTTCCAGAGGTCCTGAGTTCAAGTCCCAGCAA
CCACATGGTGGCTCACAACCATCTGTAATGGGACCTGATGCCCTCTTCTG
GTGTGTCTGAAGACAGCTACAGTGTACTTATATACATAAAATAAATAAAT
AATTCTTTTTAAAAAATTATATATTGAGCAGCCATGGGGAACAAGCATGG
TCCCTGGAAACAACAGTGACAAAGACAGTGCCCAGACACTCACAGTCATT
GAGGAGAGGGGACACAGTGATTTTCACAGGGGACAAAGCTGGTAAAAAAA
AGGCAAGGTTAGACCTGTTTGAGACCACCTCTTCCTTCCCAGGACTGGAA
AGTTGACCAAGGAGGAGTCCTGAGGGGAGACTGTTGAGATGAACCTCACA
GACTACATGGTCCTTACTGCTTTTTGCCACCAGGGGGCGACACAGCCAAG
CAGGCTGGGCAGGGCTTCCTTTTTTTCTTCACCCTCCACTCCCTGTGACT
TTACATCTGACTCAATAGCCCAGTTGTTCAACATCAGCGCTTTCCATTGC
TGTAGCTGTGTGCCTGGTTCCCATCTGTTCCCCCACTAAAATGTTTTATC
CCTGCACTCAGATCGGATCCACTACAAAACAGACCCTCAGAAAACTAGTG
GGATT

TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCACTTAAAAGATTAGATTTACTTCTAAATAGTAA
ATCAGCCCAATCCAGGAATGTTCAGAAAGAATGACAAATTCCCACAAAGG
GGAGGAGGTGTCCTCATGGCGCAAGCCTGACGACACTGTCTGCTATAAAA
AGTTCTTATCTGCAAGAAAAAAATCTCCCAGTTCTGCACTAAGCATGGGA
TGACAACAGAGGGGCGACAGGGCCGACAGAAGATTCCAGAGGTTCTGGGA
AAGCGCGACCAACCTTCCCCAGCCTGGGCTACCGGTGGCCCTGCGTGGTT
GGTCGGCAGCCTCGCCCGGCTTCTCCTTTCTCCCCAGGCCGGGGAGGAGC
CCGCACGGGGCCTCTCAGGCCGCAGCGTCGCGCCCGCCGCCATCATCAGC
CCGCGCCATCACCTGCCCGCTCGCCCGCCCACCCTGTCACTCGGCACTCA
CCGGCCGCTTGCTGCCGCGCTCTCCGACACCGAGCCCCGAAGCCACCTCC
AAGCTCCGGCCACCGCGCGCCCCCGCCCTGGCCGCGGATCCCCGGTTGAG
TCACCCGGCCCTTCAAAACAAGAGCCCCGCCCACCGCGGGGCATGCCGGG
AAGGCCGCGCGGCTCGCCCCGCCCCCGCCGCGGACTCCGCCATANGCCGG
GGCCTCGCCTGCCTGCCCGGNCGGNCGGGAACTGGGGCTCTCATACAGGG
CGGCCCAGTAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_k05.b1 MSMg01no524_k05.b1 CHROMAT_FILE:
MSMg01no524_k05.b1 PHD_FILE: MSMg01no524_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:58 2005
         (618 letters)



>mm_chr17_28898318_28899333
          Length = 1016

 Score = 1137 bits (588), Expect = 0.0
 Identities = 607/614 (98%), Gaps = 2/614 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgctgtaagattgcctttgaaagattcctaagtctggagaaatggctcagtggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgctgtaagattgcctttgaaagattcctaagtctggagaaatggctcagtggt 264

                                                                       
Query: 65  taagagcaccggttgctcttccagaggtcctgagttcaagtcccagcaaccacatggtgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taagagcaccggttgctcttccagaggtcctgagttcaagtcccagcaaccacatggtgg 324

                                                                       
Query: 125 ctcacaaccatctgtaatgggacctgatgccctcttctggtgtgtctgaagacagctaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcacaaccatctgtaatgggacctgatgccctcttctggtgtgtctgaagacagctaca 384

                                                                       
Query: 185 gtgtacttatatacataaaataaataaataattctttttaaaaaattatatattgagcag 244
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtatacttatatacataaaataaataaataattctttttaaaaaattatatattgagcag 444

                                                                       
Query: 245 ccatggggaacaagcatggtccctggaaacaacagtgacaaagacagtgcccagacactc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccatggggaacaagcatggtccctggaaacaacagtgacaaagacagtgcccagacactc 504

                                                                       
Query: 305 acagtcattgaggagaggggacacagtgattttcacaggggacaaagctggtaaaaaaaa 364
           | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 505 aaagtcattgaggacaggggacacagtgattttcacaggggacaaagctggtaaaaaa-- 562

                                                                       
Query: 365 ggcaaggttagacctgtttgagaccacctcttccttcccaggactggaaagttgaccaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggcaaggttagacctgtttgagaccacctcttccttcccaggactggaaagttgaccaag 622

                                                                       
Query: 425 gaggagtcctgaggggagactgttgagatgaacctcacagactacatggtccttactgct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gaggagtcctgaggggagactgttgagatgaacctcacagactacatggtccttactgct 682

                                                                       
Query: 485 ttttgccaccagggggcgacacagccaagcaggctgggcagggcttcctttttttcttca 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 683 ttttgccaccagggggcgacacagccaagcaggctgggcagggcttcctttttttcttta 742

                                                                       
Query: 545 ccctccactccctgtgactttacatctgactcaatagcccagttgttcaacatcagcgct 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 743 ccctccactccctgtgactttacatctgactcaatagcccagttgttcaacatcagcgat 802

                         
Query: 605 ttccattgctgtag 618
           ||||||||||||||
Sbjct: 803 ttccattgctgtag 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1016
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1006
Effective search space:   611648
Effective search space used:   611648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no524_k05.g1 MSMg01no524_k05.g1 CHROMAT_FILE:
MSMg01no524_k05.g1 PHD_FILE: MSMg01no524_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:58 2005
         (656 letters)



>mm_chr17_29089164_29090219
          Length = 1056

 Score = 1245 bits (644), Expect = 0.0
 Identities = 652/655 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacttaaaagattagatttacttctaaatagtaaatcagcccaatccaggaatgttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tcacttaaaagattagatttacttctaaatagtaaatcagcccaatccaggaatgttcag 728

                                                                       
Query: 61  aaagaatgacaaattcccacaaaggggaggaggtgtcctcatggcgcaagcctgacgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 aaagaatgacaaattcccacaaaggggaggaggtgtcctcatggcgcaagcctgacgaca 668

                                                                       
Query: 121 ctgtctgctataaaaagttcttatctgcaagaaaaaaatctcccagttctgcactaagca 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 667 ctgtctgctataaaaagttcttatatgcaagaaaaaaatctcccagttctgcactaagca 608

                                                                       
Query: 181 tgggatgacaacagaggggcgacagggccgacagaagattccagaggttctgggaaagcg 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 607 tgggatgacaacagaggggcgacaggaccgacagaagattccagaggttctgggaaagcg 548

                                                                       
Query: 241 cgaccaaccttccccagcctgggctaccggtggccctgcgtggttggtcggcagcctcgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cgaccaaccttccccagcctgggctaccggtggccctgcgtggttggtcggcagcctcgc 488

                                                                       
Query: 301 ccggcttctcctttctccccaggccggggaggagcccgcacggggcctctcaggccgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ccggcttctcctttctccccaggccggggaggagcccgcacggggcctctcaggccgcag 428

                                                                       
Query: 361 cgtcgcgcccgccgccatcatcagcccgcgccatcacctgcccgctcgcccgcccaccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cgtcgcgcccgccgccatcatcagcccgcgccatcacctgcccgctcgcccgcccaccct 368

                                                                       
Query: 421 gtcactcggcactcaccggccgcttgctgccgcgctctccgacaccgagccccgaagcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gtcactcggcactcaccggccgcttgctgccgcgctctccgacaccgagccccgaagcca 308

                                                                       
Query: 481 cctccaagctccggccaccgcgcgcccccgccctggccgcggatccccggttgagtcacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cctccaagctccggccaccgcgcgcccccgccctggccgcggatccccggttgagtcacc 248

                                                                       
Query: 541 cggcccttcaaaacaagagccccgcccaccgcggggcatgccgggaaggccgcgcggctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cggcccttcaaaacaagagccccgcccaccgcggggcatgccgggaaggccgcgcggctc 188

                                                                  
Query: 601 gccccgcccccgccgcggactccgccatangccggggcctcgcctgcctgcccgg 655
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 187 gccccgcccccgccgcggactccgccataggccggggcctcgcctgcctgcccgg 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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