Query= MSMg01no525_c04.b1 MSMg01no525_c04.b1 CHROMAT_FILE:
MSMg01no525_c04.b1 PHD_FILE: MSMg01no525_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:38 2005
(700 letters)
>mm_chr17_76056415_76057516
Length = 1102
Score = 1114 bits (576), Expect = 0.0
Identities = 627/652 (96%), Gaps = 14/652 (2%)
Strand = Plus / Minus
Query: 5 gaattccttaaattgggtgattaggtctgacttgatctgtcttggctctccatcctaagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gaattccttaaattgggtgattaggtctgacttgatctgtcttggctctccatcctaagg 599
Query: 65 ctaccccatcctattctctccttgttcaggtccttaatgtttttaaaattatcccttgct 124
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 598 ctaccccatcctattctctccttgctcaggtccttaatgtttttaaaattatcccttgct 539
Query: 125 ccctacacttcctgattctcccattgtgattttctttgctaaaaatgtcccagctccacc 184
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ccctacacttcctgattcttccattgtgattttctttgctaaaaatgtcccagctccacc 479
Query: 185 ctgtcttcatattttagcagaactatctcttaggcaggaaagaatttcttcatttcttag 244
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 478 ctgtcttcatattttagcagaactatctcttaggcaggaaagaattccttcatttctcag 419
Query: 245 acacaatcaattcccttcataaaccttcaacacaactcacaacttgtatctattatgtac 304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 418 acacaatcaattcccttcataaactttcaacacaactcacaacttgtatctattatgtac 359
Query: 305 ttgtgtattatgtacttgtgtatctaactcacactcctaccttgaattatcaggactatg 364
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 358 ttgtgtattatgtacttgtgcatctaactcacactcctaccctgaattatcaggactatg 299
Query: 365 ttggcaaggacaatgtctgttttgcttgcttttgtatactcttaatctaacgtactatct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttggcaaggacaatgtctgttttgcttgcttttgtatactcttaatctaacgtactatct 239
Query: 425 gtcaaactgtagaatacacac------------acatacatatatataacacgaattagt 472
||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 238 gtcaaactgtagaatacacacacacatacatatacatacatatatataacacaaattagt 179
Query: 473 aagtgaataaatgcatggcaaaataaagattgaataagcaagataacattggaagtgaac 532
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 aaatgaataaatgcatggcaaaataaagattgaataagcaagataacattggaagtgaac 119
Query: 533 agtgaggctgaattagaattttgatcatcagaaatagttttggggaggggcacccaggct 592
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 118 agtgaggctgaattagaattttcatcatcagaaatag--ttggggaggggcacccaggct 61
Query: 593 ctgagaacagtccaaatgaaagacatatcaagaagtcataaaatataacagg 644
||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 60 ctgagaacagtccaaatgaaagacatatcaagaagtcataaaatacaacagg 9
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1102
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1092
Effective search space: 753480
Effective search space used: 753480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_c04.g1 MSMg01no525_c04.g1 CHROMAT_FILE:
MSMg01no525_c04.g1 PHD_FILE: MSMg01no525_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:38 2005
(620 letters)
>mm_chr17_75898091_75899110
Length = 1020
Score = 803 bits (415), Expect = 0.0
Identities = 586/671 (87%), Gaps = 54/671 (8%)
Strand = Plus / Plus
Query: 1 agagttgtaggctttgaggagatctcaacactagatggtctctttcccagagacgggcat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 agagttgtaggctttgaggagatctcaacactagatggtctctttcccagagacggacat 260
Query: 61 cccgacttagactttcttccctatgcatcctgatggaccctcattccctttctatgttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccgacttagactttcttccctatgcatcctgatggaccctcattccctttctatgttcc 320
Query: 121 ttttcccttctgctcgccttccttcctcagccacagtctcttcaagccgccctttatcac 180
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 321 ttttcccttctgctcgccttccgtcctcagccacagtctcttcaagccaccctttatcat 380
Query: 181 gatctacttcttgctagtgtctccatcatccagttacgttgatgtatctcgtgagcttag 240
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 381 gatctacttcttgctagtgtctccatcagccagttacgttgatgtatcgcgtgagcttag 440
Query: 241 gtgaaatcatcccttcctaaggaccccgacgtaaatcacaccgttgctgggaagcaagat 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 gtgaaatcatcccttcctaaggaccccgacgtaaatcacatcgttgctgggaagcaagat 500
Query: 301 gatttgactagaacgtagatttctttctttct--ct--ctttctttctttcttcctttct 356
||||||||||||||||||||| |||||||||| || ||||||||||||||| ||||||
Sbjct: 501 gatttgactagaacgtagattcctttctttctttcttcctttctttctttctttctttct 560
Query: 357 ttctttct-t-----tctttctttctttctt---tc---------tttctttctttcttt 398
|||||||| | |||||||||||||||| || |||||||||||||||
Sbjct: 561 ttctttctctctctctctttctttctttcttctttccttccttcctttctttctttcttt 620
Query: 399 ctttct----ttctttct----ttgtttctctctttgtttctttctttgt---------- 440
|||||| |||||||| || ||||||||||| | ||||||||| |
Sbjct: 621 ctttctctctttctttctctctttctttctctctttctctctttctttctctttctctct 680
Query: 441 ----------ttctttctttcttccttccttccttcctttctctctctctctctctctct 490
||||||||||||| ||| ||| ||| |||||| ||| ||||||| |||||
Sbjct: 681 ctctctctctttctttctttctttctttctttctttctttctttctttctctctttctct 740
Query: 491 ctctctctctctctctctctctctttctttctttctttctttctttctttcagcaccctt 550
|||| ||||||||||||||||||| ||| ||| ||| ||| ||| ||| || |||||||
Sbjct: 741 ctctttctctctctctctctctctctctctctctctctctctctctct--catcaccctt 798
Query: 551 actttttccccccatcttcctttcacctt-gaaagactagaagctcattgtgtattgaga 609
|||||||||||||| ||||||||| |||| ||||||||||||||||| ||||||||||||
Sbjct: 799 actttttccccccaccttcctttc-cctttgaaagactagaagctcactgtgtattgaga 857
Query: 610 gtataatattc 620
|||| ||||||
Sbjct: 858 gtattatattc 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 253
Number of extensions: 46
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
