BAC Information

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BAC

Clone NameMSMg01-525L04
Chromosome17 (Build37)
Map Location 86,104,310 - 86,104,812
singlet/doubletsinglet
Overlap genenone
Upstream geneLrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901, 1700106N22Rik, EG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2
Downstream geneLOC100043903, Srbd1, LOC545228, Prkce
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525L04.T7 (MSMg01no525_l04.b1)MSMg01-525L04.TJ (MSMg01no525_l04.g1)
ACCAG595470AG595471
length743741
length of high quality
(start - end)
453 (55 - 507)497 (68 - 564)
definitionCHROMAT_FILE: MSMg01no525_l04.b1 PHD_FILE: MSMg01no525_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:24 2005CHROMAT_FILE: MSMg01no525_l04.g1 PHD_FILE: MSMg01no525_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTATTTCATGGTAGTCTGATAAGATACATGAGGTTATTTCAAGTTT
TTTGTATCCGTTGAGGCTTGTGTTGTGACCAATGATATAGTTAATTTTGG
AGAAGGTTCTTTGAGGTACTGAGAAGAAGGTATGTGCTTTTGTGTTTGGG
TGAAAAGTTCTATAGATAGCCATTAGGTCCATTTGATTCATAACCTCTGT
TAGTTCCATTATTTTACTGTTTAGTTTCTGTCTCCATGACCTATTCATTG
GTGAGAGCAGGGTGTTGAAGTCTCCCACTCTTAATTTAAGCTTTAGTAAT
GTTTCTTTAATAAATGTGGTTTCCCTTGAATTTGGGGCATAGATGCTCAG
AAGTGAGATGGCATCTTGGTAGACTTTTCTTTTGGTAAGTATAAAGTGTC
CTTCCTCATCTATTTTGAATATGTTTGCTTGAAAGCATATTTTATTAGAT
ATTATAATGGCTACTCTAGCTTGCTTTTCTGGTCTGTTTTCTTGTAAAAT
CCTTTCTAGTTCTTCACTCTGAGATAATGTCTATGTTTGCTGCTGATGCG
TGCTTCTTGCGCGCATAATAATAACGGTATCTGTTTGCTTGCTTGTTTGT
TTTTGTTTTTGTTTTTATCCGTGTTGTGAAGGAACCACTTTCCTTTCCTT
AAAAGAAAAAATTTTTCTTAACGATGGTCGATCTATCATCTTG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAACACAGAACCCAAGTGAGAAAGAGAGAGAGAC
AGAGACAGAGAGACAGAGAGACAGAAAGAGACAGAGACACAGAGAGACTC
AAGGCCACTCTCAGAATCAAGCACGAAAAGTAGAAAAAAAAATCAATGGC
CAAATGTTACATTTCCTGAAGCAACAAAATTCAGGTGACTCAGTGGGTGT
GTTCAATTCAACAGGTCCTCTACTTCTCTTCCTGCCCGCAAGTTCAAGTG
TGTGCATGTGTGTGTGTGCACTGGTACATGTGTGTGCACATAAGGGGCTG
CAAGTGTCCTTCTGCATGTCTGACTCCGCTCCAGAGAAGAGTGCCAAATG
AGTAGTTTATACTGGAAGCAGCCTGGAATATCTGACTACTTATGTAGCTA
TGTGTTGTATGGCCTCTTAATTTAGCCCTCATTCCAGATGCATGACACGT
CCTTTTGACACCTCGAAGAAATGTTTCTCAGATGGCAGGCTGGGCACCAC
AGCTCCAGGCTGCCAAAGGAAAACACATGGCTCTAAAAATTAAAAGTGAC
CTAGATCCTCCTAGGATATGCCTCGCTTCAGGCTACCTGATGTGGCCATT
TATTAAGTGGCTTAATCACGATATGGAACTCCGTCTCAGAGCATTTAACC
CTCTTTCTGGGCACCCCTGGGTGCCTCTGATTATGGATGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_l04.g1 MSMg01no525_l04.g1 CHROMAT_FILE:
MSMg01no525_l04.g1 PHD_FILE: MSMg01no525_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:24 2005
         (497 letters)



>mm_chr17_86104030_86104922
          Length = 893

 Score =  855 bits (442), Expect = 0.0
 Identities = 485/508 (95%), Gaps = 16/508 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacacagaacccaagtgagaaagagagagagacagagacag----------agagacaga 50
           |||||||||||||||||||||||||||||||||||||||||          |||||||||
Sbjct: 783 aacacagaacccaagtgagaaagagagagagacagagacagagagacagacagagacaga 724

                                                                       
Query: 51  gagacagaaagagacagagacacagagagactcaaggccactctcagaatcaagcacgaa 110
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 723 gagacagagagagacagagacacagagagactcaaggccactctcagaatcaagcatgac 664

                                                                       
Query: 111 aagtag-aaaaaaaaatcaatggccaaatgttacatttcctgaagcaacaaaattcaggt 169
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aagtagaaaaaaaaaatcaatggccaaatgttacatttcctgaagcaacaaaattcaggt 604

                                                                       
Query: 170 gactcagtgggtgtgttcaattcaacaggtcctctacttctcttcctgcccgcaagttca 229
           |||||||||||||||     |||||||||||||||||||||||||||||||||||||| |
Sbjct: 603 gactcagtgggtgtg-----ttcaacaggtcctctacttctcttcctgcccgcaagttta 549

                                                                       
Query: 230 agtgtgtgcatgtgtgtgtgtgcactggtacatgtgtgtgcacataaggggctgcaagtg 289
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 548 aatgtgtgcatgtgtgtgtgtgcactggtacatgtgtgtgcacataaggggctgcgagtg 489

                                                                       
Query: 290 tccttctgcatgtctgactccgctccagagaagagtgccaaatgagtagtttatactgga 349
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tccttctgcatgtctgactctgctccagagaagagtgccaaatgagtagtttatactgga 429

                                                                       
Query: 350 agcagcctggaatatctgactacttatgtagctatgtgttgtatggcctcttaatttagc 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agcagcctggaatatctgactacttatgtagctatgtgttgtatggcctcttaatttagc 369

                                                                       
Query: 410 cctcattccagatgcatgacacgtccttttgacacctcgaagaaatgtttctcagatggc 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cctcattccagatgcatgacacgtccttttgacacctcgaagaaatgtttctcagatggc 309

                                       
Query: 470 aggctgggcaccacagctccaggctgcc 497
           ||||||||||||||||||||||||||||
Sbjct: 308 aggctgggcaccacagctccaggctgcc 281


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 893
Length adjustment: 10
Effective length of query: 487
Effective length of database: 883
Effective search space:   430021
Effective search space used:   430021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)