BAC Information

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BAC

Clone NameMSMg01-525L11
Chromosome17 (Build37)
Map Location 12,970,920 - 12,971,594
singlet/doubletsinglet
Overlap genenone
Upstream genePark2, Agpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air
Downstream geneEG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525L11.T7 (MSMg01no525_l11.b1)MSMg01-525L11.TJ (MSMg01no525_l11.g1)
ACCAG595484AG595485
length741750
length of high quality
(start - end)
679 (36 - 714)632 (67 - 698)
definitionCHROMAT_FILE: MSMg01no525_l11.b1 PHD_FILE: MSMg01no525_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:25 2005CHROMAT_FILE: MSMg01no525_l11.g1 PHD_FILE: MSMg01no525_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGTC
CTGATTGCCTTTGGTACTGAACAGTAATGTGAAGGTGTAAGCCAGGTTAA
CCCTTTTCTCCTGGCTTGCCTTTGGGTCATGGTGTTGTTTCACTGGAGCA
ATGGAAATTGTAACTAAGTCACCAGCTGTGGTGGCCCACACTTGTAACCC
CAACTTTTGGGAAGCTGAGACGGTTGCATCATGTTCCCAAAGCTAACCTG
GACTTCATAATTCTAGGCCAACGAAGGACACAAAGTGAGAGCCTTTCTCA
AAGGGGGAAATGCAACAAAAGAGAAAGCCAACAGCTTTTTCTCCTCAACA
GCATATTTTCTAGTTGGTAAAAATCTGCTTAGGACTGGAATCCTGGCCTA
TAGCATGGAGCAGAGAGGGGAATGGGCAGGTGGAGCTTGCTGTCTTCCTG
TAGGCTCCTGATTCCCTTCTGGCCAGCAAAGGATATCTCTAGATTGAGAG
CATGAGGTCCTTGGCTTTACTATGCTTACAACCAGAGTCAATACCTTTCA
ACCCCATCCTGACAGAGGCTTGGTAGGCAATAACCTGGGGCATGCTGTCA
AATGCTCTTCTCTCCAATAAGATAAAATTTGATCAGATTGGCCTCTGTCC
ATGAAGGCACTTTCTTGGTTGCTGGTTGATATATGAAGGCCCAGCCCACT
GTAGGTAGTAAGATCCCTAAGATGATTGGCCTGCTATAACA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGTATTTTTAAAGCTGAATTTCTCTCTCTTCCCT
TAAATCTATTCTCAAAGTGAACAATAGATTAAAACTAGGGTCAGAAATAT
GGATCTGCAGATAGAAGTGATTGCTGCCCAACCCGATAACCTGAGTTTGA
AACCCAGGACCTGCATGGTAGAAGGAGAAAATCAAATCCTGAAAGATGCG
ATGTGTGTGCCCTCCCCCACATATATACACATGTGAGTGAGTAAGTGTGT
GTGTGCACGTACACACAAAATAAATGTACTAAAAATTTAAAAACTCCTAT
CAGGTGTGGCAGCTCATGCCCACAACTTCAGCACTCAGGCAAATGAGGTA
GAAGGATTGCTGTAAGTTCTAGTCTAGGCTACATAGTAACTTTCGGGCAA
TCCTGGGCTATGCTAATTAGAGTGTAAGATCCTGTTTTTAAAAAAGGCCA
AAGTGGCTTGGTCTTAGTGCCATCTTCCTTGAGACTCCTGCGCCATGAGA
GCAAAGTGGCGGAAGAAGAGAATGCACAGGCTGAAGCACAAGAGAAGAAA
GATGAGGCAGAGGTCCAAGAAAGCCAGCCCGTGCACCCACGACACCTGCA
GGAGCAGAAGTGAGGGATGCTGAGGGCGGTGACAAGCTATCGGACTGTGT
GCTGCCATCAGTAATGAGTCTCAGTAGACCTGGAACGTCACCTCGCTTCN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_l11.b1 MSMg01no525_l11.b1 CHROMAT_FILE:
MSMg01no525_l11.b1 PHD_FILE: MSMg01no525_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:25 2005
         (679 letters)



>mm_chr17_12970716_12971794
          Length = 1079

 Score = 1290 bits (667), Expect = 0.0
 Identities = 673/675 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgtcctgattgcctttggtactgaacagtaatgtgaaggtgtaagccaggtta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgtcctgattgcctttggtactgaacagtaatgtgaaggtgtaagccaggtta 264

                                                                       
Query: 65  acccttttctcctggcttgcctttgggtcatggtgttgtttcactggagcaatggaaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acccttttctcctggcttgcctttgggtcatggtgttgtttcactggagcaatggaaatt 324

                                                                       
Query: 125 gtaactaagtcaccagctgtggtggcccacacttgtaaccccaacttttgggaagctgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtaactaagtcaccagctgtggtggcccacacttgtaaccccaacttttgggaagctgag 384

                                                                       
Query: 185 acggttgcatcatgttcccaaagctaacctggacttcataattctaggccaacgaaggac 244
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 tcggttgcatcatgttcccaaagctaacctgaacttcataattctaggccaacgaaggac 444

                                                                       
Query: 245 acaaagtgagagcctttctcaaagggggaaatgcaacaaaagagaaagccaacagctttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaaagtgagagcctttctcaaagggggaaatgcaacaaaagagaaagccaacagctttt 504

                                                                       
Query: 305 tctcctcaacagcatattttctagttggtaaaaatctgcttaggactggaatcctggcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctcctcaacagcatattttctagttggtaaaaatctgcttaggactggaatcctggcct 564

                                                                       
Query: 365 atagcatggagcagagaggggaatgggcaggtggagcttgctgtcttcctgtaggctcct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atagcatggagcagagaggggaatgggcaggtggagcttgctgtcttcctgtaggctcct 624

                                                                       
Query: 425 gattcccttctggccagcaaaggatatctctagattgagagcatgaggtccttggcttta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gattcccttctggccagcaaaggatatctctagattgagagcatgaggtccttggcttta 684

                                                                       
Query: 485 ctatgcttacaaccagagtcaatacctttcaaccccatcctgacagaggcttggtaggca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctatgcttacaaccagagtcaatacctttcaaccccatcctgacagaggcttggtaggca 744

                                                                       
Query: 545 ataacctggggcatgctgtcaaatgctcttctctccaataagataaaatttgatcagatt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ataacctggggcatgctgtcaaatgctcttctctccaataagataaaatttgatcagatt 804

                                                                       
Query: 605 ggcctctgtccatgaaggcactttcttggttgctggttgatatatgaaggcccagcccac 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggcctctgtccatgaaggcactttcttggttgctggttgatatatgaaggcccagcccac 864

                          
Query: 665 tgtaggtagtaagat 679
           |||||||||||||||
Sbjct: 865 tgtaggtagtaagat 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)