TTTTTCGTCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATAGTACTGAGTATGTTCAATAAGCCTGAAATCAGGA
GCTTAAATGCCAGTGGCCCAAATTTAAGTGTCCCATGATTGAGAAGGAAG
CCAACCAACCAGCAGATAGAAATATAAACCCCTAGAGGTAGGCAATTCTA
TCTGCTCTTCAAAAGACTTCAGAGACCAAGTCCTGAAAAACTGACATCCA
TTTTAAAGTAATCCCCATGTGCATACAGTTGTGCACACATATGGATTCAC
AAACCAATGACACCCAAGGTCACAAGTCATCGATGCAATCAAAGCCATAG
AGACGTCCAAGAAAACTAACAGACATAGAAAACAAAGTATCTTTACATGT
GACACTAGAATGAAAATAATTTTAAAATGTAGAAGATCCATTAATATTTA
TAAGACTGTGTGTATTGGAAATACAGAGTTCAAACTCAAACTTTACTCCC
AATCCAGCATCTCTACACTCTCTCCGGTACCTTTTCCACTTCTCTCACTA
GGAACTGCATTCATCGATAGTGAGAAACTTGACTCTCATAGTAATTCATA
TTCTATTGAATTATATTTCCAACCCTGATATATATGTAAAATGGTTTCAG
AATCTCTAAACAACACCTGTGTGGATAAAAAAAATACTGTCTATAATGTA
AGATTTTAGTAGTTAAAAAAAAAAACTATAGTCTCATN

TTGGGTTTTNNNNNTTTTTTTNNTTTTCTATGATAXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCATGGTGGAAGGGAATGCTTAGCTGAGTGGTGCTTTCTTCTCAGCTT
TACATGCAAAGCCAGTTTGTCACCAGGGACCCGAGGAGGCTAAAGGGCCC
CCATTTAAAGAAAGAGTCCCCCCTGGTCCTAAGGTTTCCCGGGGCCGGCC
CCTTTTTTAACCTTGGGAGGGGAACTTTGGGGGGGGGGGGCTCTGAGGGA
GGCTTTTTTCCCGCTTTTTTTTTTTTTTCTAACACACCAAAGGGGGAAAA
AATTTTTTGTTTTTTTTTTTTTAGAAAAACACCCCTTTAAAAGGCGTCTT
GCCCCCCAAAAAAGAGAAAAAACCCCCTTTTTTTTTTTTGAAAAAAAAAA
AAAAAAAAAAAAAAGAAGGTGGGTTTTCTCCTCCCCCCCCCCCCCCCCAA
AAAAAAAACACCCCCCCCCGCCCCCTCCCCCACGAATTATTTTTTTTTTT
TTTTGTGGGGGGCGCCCCCCCCCCCCCCTCCTCTCTTAAAAATAATAAAA
AAGAGGGGGGGGGGGGCGCACCAAAACCT

Query= MSMg01no527_f02.b1 MSMg01no527_f02.b1 CHROMAT_FILE:
MSMg01no527_f02.b1 PHD_FILE: MSMg01no527_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:31 2005
         (685 letters)



>mm_chr17_68546876_68547960
          Length = 1085

 Score = 1120 bits (579), Expect = 0.0
 Identities = 612/623 (98%), Gaps = 1/623 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatagtactgagtatgttcaataagcctgaaatcaggagcttaaatgccagtggc 64
           |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 622 gaattcatagcactgagtatgttcaataagcctgaaatcaggagcttaagtgccagtggc 563

                                                                       
Query: 65  ccaaatttaagtgtcccatgattgagaaggaagccaaccaaccagcagatagaaatataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ccaaatttaagtgtcccatgattgagaaggaagccaaccaaccagcagatagaaatataa 503

                                                                       
Query: 125 acccctagaggtaggcaattctatctgctcttcaaaagacttcagagaccaagtcctgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acccctagaggtaggcaattctatctgctcttcaaaagacttcagagaccaagtcctgaa 443

                                                                       
Query: 185 aaactgacatccattttaaagtaatccccatgtgcatacagttgtgcacacatatggatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaactgacatccattttaaagtaatccccatgtgcatacagttgtgcacacatatggatt 383

                                                                       
Query: 245 cacaaaccaatgacacccaaggtcacaagtcatcgatgcaatcaaagccatagagacgtc 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 382 cacaaaccaatgacacccaaggtcacaagtcatcgatgcaatcaaagccatagagatgtc 323

                                                                       
Query: 305 caagaaaactaacagacatagaaaacaaagtatctttacatgtgacactagaatgaaaat 364
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caagaaaactaacagacttagaaaacaaagtatctttacatgtgacactagaatgaaaat 263

                                                                       
Query: 365 aattttaaaatgtagaagatccattaatatttataagactgtgtgtattggaaatacaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aattttaaaatgtagaagatccattaatatttataagactgtgtgtattggaaatacaga 203

                                                                       
Query: 425 gttcaaactcaaactttactcccaatccagcatctctacactctctccggtaccttttcc 484
           ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 202 gttcaaactcaaactttactcccaatccagcatctctacactcactccggcaccttttcc 143

                                                                       
Query: 485 acttctctcactaggaactgcattcatcgatagtgagaaacttgactctcatagtaattc 544
           |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 142 acttctctcactaggaactgcattcatcgatagtgagaaacttgactctcgtaataattc 83

                                                                       
Query: 545 atattctattgaattatatttccaaccctgatatatatgtaaaatggtttcagaatctct 604
           ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 82  atattctattgaattgtatttccaaccctgctatatatgtaaaatggtttcagaatctct 23

                                  
Query: 605 aaacaacacctgtgtggataaaa 627
           |||||||||||||||||| ||||
Sbjct: 22  aaacaacacctgtgtgga-aaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)