NNCCCCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTCTTTTCTTTTCTTTTTTAAAAATTTTTTTAATTAG
GTATTTTCTTCATTTACATTTCCAATGCTATCCCAAAACTACCCCAGACC
CTCCCCACCCCAACTCCCCTACCCACCCACTCCAACTTCTTGGCCCTGGT
GTTCCCCCGTACTGAGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCT
TCCCAATGATGGCCAACTAGGCCATCTTCTGCTACATATGCGGCTAGAGG
CATGAGCTCTAGGGGGTACTCAGTAGTTCATATTGTTGTTCCACCTATAG
GGTTGCAGACCCCTTTAGCTTCTTGGGTACTTTCTCTAGCTCCTCCATTG
GGGGCCCTGTGATTCATCCAATAGTTGACTGTGAGCATCCACTTCTGTGT
TTGCCAGGCCCCAGCATACAGAGACAAGAGACATCTGGGTCTTTTCAGCA
AAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGAGGCTGATTATGG
GATGGATCCCCGGGAATGGCAGTCTCTAGATGCTCCATCCTGTGCCAATA
TGAATCCTTGAGACTATAACCTTATAGGACCAAGTATATATAAAACATTT
ATATTATATGAATTTCATTCTCATGTCTTTCCAAAGTAGTCATATAATAT
TACAGCTCCTCAATGAAACTTCGTTTCATTGTGTGTGTGTGT

NTTTTTTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAA
TGGCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGC
TAAGATCAAAAACTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAA
GGGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTC
TGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCG
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATTTATACAATGGAATACTACTCAGCTATTAAAAAAA
TGAATTCATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACCCAATCACAAAGGAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCCAGAAACTTAGGATACCCAAGACATAAGATACG
ACTTGCTAAATGCATGAAATTCAAGAAGGAAGACCAAAGTGGGGACA

Query= MSMg01no528_b10.b1 MSMg01no528_b10.b1 CHROMAT_FILE:
MSMg01no528_b10.b1 PHD_FILE: MSMg01no528_b10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:35 2005
         (686 letters)



>mm_chr17_91588099_91589184
          Length = 1086

 Score = 1261 bits (652), Expect = 0.0
 Identities = 671/682 (98%), Gaps = 8/682 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcttttcttttcttttttaaaaatttttttaattaggtattttcttcattta 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattctttcttttcttttctttttaaaaaatttttttaattaggtattttcttcattta 272

                                                                       
Query: 65  catttccaatgctatcccaaaactaccccagaccctccccaccccaactcccctacccac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 catttccaatgctatcccaaaactaccccagaccctccccaccccaactcccctacccac 332

                                                                       
Query: 125 ccactccaacttcttggccctggtgttcccccgtactgaggcatataaagtttgcaagac 184
           ||||||||||||||||||||||||||||        ||||||||||||||||||||||||
Sbjct: 333 ccactccaacttcttggccctggtgttc--------tgaggcatataaagtttgcaagac 384

                                                                       
Query: 185 caaggggcctctcttcccaatgatggccaactaggccatcttctgctacatatgcggcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caaggggcctctcttcccaatgatggccaactaggccatcttctgctacatatgcggcta 444

                                                                       
Query: 245 gaggcatgagctctagggggtactcagtagttcatattgttgttccacctatagggttgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaggcatgagctctagggggtactcagtagttcatattgttgttccacctatagggttgc 504

                                                                       
Query: 305 agacccctttagcttcttgggtactttctctagctcctccattgggggccctgtgattca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agacccctttagcttcttgggtactttctctagctcctccattgggggccctgtgattca 564

                                                                       
Query: 365 tccaatagttgactgtgagcatccacttctgtgtttgccaggccccagcatacagagaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tccaatagttgactgtgagcatccacttctgtgtttgccaggccccagcatacagagaca 624

                                                                       
Query: 425 agagacatctgggtcttttcagcaaaatcttgctagtgtatgcaatggtgtcagcgtttg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agagacatctgggtcttttcagcaaaatcttgctagtgtatgcaatggtgtcagcgtttg 684

                                                                       
Query: 485 gaggctgattatgggatggatccccgggaatggcagtctctagatgctccatcctgtgcc 544
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 685 gaggctgattatgggatggatccccgggaatggcagtctctaaatgctccatcctgtgcc 744

                                                                       
Query: 545 aatatgaatccttgagactataaccttataggaccaagtatatataaaacatttatatta 604
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 745 aatatgaatccttgagactataaccttataggaccaagtatatttaaaacatttatatta 804

                                                                       
Query: 605 tatgaatttcattctcatgtctttccaaagtagtcatataatattacagctcctcaatga 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tatgaatttcattctcatgtctttccaaagtagtcatataatattacagctcctcaatga 864

                                 
Query: 665 aacttcgtttcattgtgtgtgt 686
           ||||||||||||||||||||||
Sbjct: 865 aacttcgtttcattgtgtgtgt 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)