BAC Information

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BAC

Clone NameMSMg01-528F07
Chromosome17 (Build37)
Map Location 19,673,499 - 19,674,013
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537
Downstream geneEG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528F07.T7 (MSMg01no528_f07.b1)MSMg01-528F07.TJ (MSMg01no528_f07.g1)
ACCAG597473AG597474
length748750
length of high quality
(start - end)
596 (50 - 645)601 (77 - 677)
definitionCHROMAT_FILE: MSMg01no528_f07.b1 PHD_FILE: MSMg01no528_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:54 2005CHROMAT_FILE: MSMg01no528_f07.g1 PHD_FILE: MSMg01no528_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTTTATAAGCAGGCACACACCCTGACACTATTGCTGAAAC
AACTTTGTGCTTGAACATAGGAACCTATGCTGCATGGTCTGAGGCCTAAA
ACACATATTTAGCAGAGGACTGCCTTGTCTGGCCTCAGTGAGAGAGGAAG
AGCCTAATATTGAAGAGACTTTATGCCCCAGGAATGGGAGATGCCGGGGG
TGGGAGAGCACTACCTCAGAGGTAAAGGAGAGGGGTAATATGGTGAATAA
ATCTGGGAAGGAAGAACAACAGGGGGCATATTTTGGGATGTAAACTAATA
AATAATTTTACAAACTAATCTAGAGGCATGTTTTCCCAAGACTTGACAGC
CCATTCTCAGGCTAGCAGCTTTTGAGGTTTCAAGGGCAGTAGATATAAGT
AAAATCTCCAAGCTCAGGTGGGAGCTTTCATTTCCCAACTGGTGCATTAT
CAACTTTAATGGCCAAAGTACCAGTTGTCATTTGAGGCCGAGAAAAACTT
TCAGGCCAATGCTGCTGTTGTCATTTCAAATTCTGACATAATATAATGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNGTGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTNTTN
NCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCCAACAATATATTCTTATG
TATGTATGAAATAGGTAGTATGGCATGGAAATAGAACAACACTTCTTATC
TTTCTCTGTGAACCGAAGAGGAAATATGTTAGAAATCAAGAAGCAGAAAA
TGACCAAAAGAAAAACAGGAAAGATTTTAGAATATCTAAACGGGAATCTG
ACAAAATTACAATTAAAAACATCAAATAAATTATAAGCTGAGTTATGCTC
TATGAGAGAATACTCTGTGCTTGGTAAATCCTTTGATGTATTGAATTATT
AAATCAAAGAGAATGGAGGGGAAATGTTTAGACATAAATTAAAACAATCA
TTTTATTGTTGTACACAGTAATTTTGAGTATTTAAACATATCATATATGG
GTACATAAAATTTGTTATTTGTATAAAATATTTAATGGTATTTCGAAATT
TTTAGGGAATCATTTGTTGACTCAAATGAAATCATAATATTTTCTCATAT
GCTTAGTTGTCGGGGCAACTTTACTTTTTGGGTAGGCCCTTTTCTAATTT
TTTATGATTAATGTTCCTTATTAATCCACTTTTCTGGTGCCCTTTACTCT
CAGTAGTTCAGGTACCAATGTGTATGGTTATGTGTTTCTCATATTTTGTG
CAGCAACTACCACTTCACTGTACAGGCTGTACTTTCCAGATATGTGAGCA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_f07.b1 MSMg01no528_f07.b1 CHROMAT_FILE:
MSMg01no528_f07.b1 PHD_FILE: MSMg01no528_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:54 2005
         (596 letters)



>mm_chr17_19673018_19674013
          Length = 996

 Score =  988 bits (511), Expect = 0.0
 Identities = 514/515 (99%)
 Strand = Plus / Minus

                                                                       
Query: 58  gtgcttgaacataggaacctatgctgcatggtctgaggcctaaaacacatatttagcaga 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 gtgcttgaacataggaacctatgctgcatggtctgaggcctaaaacacatatttagcaga 937

                                                                       
Query: 118 ggactgccttgtctggcctcagtgagagaggaagagcctaatattgaagagactttatgc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 ggactgccttgtctggcctcagtgagagaggaagagcctaatattgaagagactttatgc 877

                                                                       
Query: 178 cccaggaatgggagatgccgggggtgggagagcactacctcagaggtaaaggagaggggt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 cccaggaatgggagatgccgggggtgggagagcactacctcagaggtaaaggagaggggt 817

                                                                       
Query: 238 aatatggtgaataaatctgggaaggaagaacaacagggggcatattttgggatgtaaact 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 aatatggtgaataaatctgggaaggaagaacaacagggggcatattttgggatgtaaact 757

                                                                       
Query: 298 aataaataattttacaaactaatctagaggcatgttttcccaagacttgacagcccattc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 aataaataattttacaaactaatctagaggcatgttttcccaagacttgacagcccattc 697

                                                                       
Query: 358 tcaggctagcagcttttgaggtttcaagggcagtagatataagtaaaatctccaagctca 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tcaggctagcagcttttgaggtttcaagggcagtagatataagtaaaatctccaagctca 637

                                                                       
Query: 418 ggtgggagctttcatttcccaactggtgcattatcaactttaatggccaaagtaccagtt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ggtgggagctttcatttcccaactggtgcattatcaactttaatggccaaagtaccagtt 577

                                                                       
Query: 478 gtcatttgaggccgagaaaaactttcaggccaatgctgctgttgtcatttcaaattctga 537
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gtcatttgaggctgagaaaaactttcaggccaatgctgctgttgtcatttcaaattctga 517

                                              
Query: 538 cataatataatgtgtgtgtgtgtgtgtgtgtgtgt 572
           |||||||||||||||||||||||||||||||||||
Sbjct: 516 cataatataatgtgtgtgtgtgtgtgtgtgtgtgt 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)