Query= MSMg01no528_n07.b1 MSMg01no528_n07.b1 CHROMAT_FILE:
MSMg01no528_n07.b1 PHD_FILE: MSMg01no528_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:33 2005
(698 letters)
>mm_chr17_78435947_78437046
Length = 1100
Score = 1253 bits (648), Expect = 0.0
Identities = 684/696 (98%), Gaps = 2/696 (0%)
Strand = Plus / Minus
Query: 5 gaattccattctattagtatcatcgagattttgtttattcatagatgaaatagctttagt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 gaattccattctattagtatcatcgagattttgtttattcatagatgaaatagctttagt 841
Query: 65 ttcactatttgaatatggtagctcagattaactctaagactgtcttgtcaagagacttca 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 ttcactatttgaacatggtagctcagattaactctaagactgtcttgtcaagagacttca 781
Query: 125 gtcatcccacagcagtttctatcctttgatagaaaccaaatgcccattttgactgtaatt 184
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 780 gtcatcccacagcagtttctatcctttgatagaaactaaatgcccattttgactgtaatt 721
Query: 185 aatgtgaacacaccggagaactgctctacactcatatcttcatataacaaatgttcatgt 244
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aatgcaaacacacctgagaactgctctacactcatatcttcatataacaaatgttcatgt 661
Query: 245 gatgtcatgtgatgtcattcaggacttgactcagatacttttcctttttgccagtataac 304
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 660 gatgtcatgtgatgtcattcaggacatgactcagatacttttcctttttggcagtataac 601
Query: 305 tcaaagatttcctaaggacatgagcaaggggagggaaatgattattattgcctaaataac 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 600 tcaaagatttcctaaggacatgagcaaggggagggaaatgattattattgcctagataac 541
Query: 365 aggaaagggggatactagtaagtatgtgctattactatgaaatttattgcacagagaatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aggaaagggggatactagtaagtatgtgctattactatgaaatttattgcacagagaatc 481
Query: 425 actggtgtctggtttaaatgttatgtacataacagtgaacaaacaagccagtctcgagct 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 480 actggtgtctggtttaaatgttatgtacataacagtgaacaaacaagccagtcttgagct 421
Query: 485 ttatccaaatgatggctactgatatgatccagaagattaaacagtcaaattatttgtaac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttatccaaatgatggctactgatatgatccagaagattaaacagtcaaattatttgtaac 361
Query: 545 tatagataatgatcaggacatcaagaaaatcacagtaaaataaggggaaggaatgctgct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tatagataatgatcaggacatcaagaaaatcacagtaaaataaggggaaggaatgctgct 301
Query: 605 gtagttatagggttatttcttagtgtgggtggagaacgtctctgataaaa-tacatatga 663
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 300 gtagttatagggttatttcttagtgtgggtggagaacgtctctgataaaattacatatga 241
Query: 664 acagatatgaagagg-aaaaatggagtttgagatat 698
|| |||||||||||| ||||||||||||||||||||
Sbjct: 240 actgatatgaagaggaaaaaatggagtttgagatat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1100
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1090
Effective search space: 749920
Effective search space used: 749920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_n07.g1 MSMg01no528_n07.g1 CHROMAT_FILE:
MSMg01no528_n07.g1 PHD_FILE: MSMg01no528_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:33 2005
(644 letters)
>mm_chr17_78278101_78279142
Length = 1042
Score = 1195 bits (618), Expect = 0.0
Identities = 637/644 (98%), Gaps = 2/644 (0%)
Strand = Plus / Plus
Query: 1 aatgatccataagaggtttttcaacctctcatctgtatttttctatagggcatttaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgatccataagaggtttttcaacctctcatctgtatttttctatagggcatttaaata 260
Query: 61 caaaataatgccaaaagaaaacttatacagtattaatacaagcccataataacagcatta 120
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 caaaataatgccaaaagaaaacttatacagtattaatacaaggtcataataacagcatta 320
Query: 121 atttagaggtgagtatatgtctttctatattatccttgaaattctttgtaaatatgaaat 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttagaggtgggtatatgtctttctatattatccttgaaattctttgtaaatatgaaat 380
Query: 181 tgttctgaaataaaacatattttcaaaacatccatttactgttttattcagcattttaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttctgaaataaaacatattttcaaaacatccatttactgttttattcagcattttaaa 440
Query: 241 tgttctctttgttgcacacactctgccatacaaagaagaacaaaagatatgaattctacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttctctttgttgcacacactctgccatacaaagaagaacaaaagatatgaattctacc 500
Query: 301 catgaagtatactagacaaatttaattattgagtatggtggtaattaggaggaagatgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgaagtatactagacaaatttaattattgagtatggtggtaattaggaggaagatgaa 560
Query: 361 gtcacttatagctgagggttacagaagaatgatggagaagacacagttgtatctccctca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcacttatagctgagggttacagaagaatgatggagaagacacagttgtatctccctca 620
Query: 421 taatagatagccacccttttcttatatctataaaaatatgagtaaatgttgcttacttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taatagatagccacccttttcttatatctataaaaatatgagtaaatgttgcttacttca 680
Query: 481 aaattttgctaattcctaaactatcactccttagaagcaataaaaaccataagagaataa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaattttgctaattcctaaactatcactccttagaagcaataaaaaccataagagaataa 740
Query: 541 acataacaaactcagcatagaacggtacgtgagtagccaatgttgagtgtcctcatccga 600
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 741 acataacaaac--agcatagaacggtacgtgagtagccaacgttgagtgtcctcatccga 798
Query: 601 gtgccaagcacttgagacacgactcagcgaacaaatgatagaga 644
||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 799 gtgccaagcacttgagacatgactcagcgaacaaatgatagaga 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1042
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1032
Effective search space: 654288
Effective search space used: 654288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
