BAC Information

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BAC

Clone NameMSMg01-528N12
Chromosome17 (Build37)
Map Location 60,175,367 - 60,175,670
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043537, LOC100043542
Downstream geneLOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528N12.T7 (MSMg01no528_n12.b1)MSMg01-528N12.TJ (MSMg01no528_n12.g1)
ACCAG597864AG597865
length748738
length of high quality
(start - end)
695 (54 - 748)656 (83 - 738)
definitionCHROMAT_FILE: MSMg01no528_n12.b1 PHD_FILE: MSMg01no528_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:34 2005CHROMAT_FILE: MSMg01no528_n12.g1 PHD_FILE: MSMg01no528_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTTTGTAATTGACCATATAATTGGTCACAAAACAGG
CATCAACAGATACAAAAATATTGAAATCTTCCGATGCATCCTATCAGACC
GCCATGGACTAAGGCTGATCTTCAATAACAACATAAATAATGGAAAGCCA
ACATTCACGTGGAAAATGAATAACACTCTTCTCAATGATAACTTGGTCAA
GGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATG
AAGCCACAACATACCCAAACTTAGGGGACACTGTGAAAGCATTTCTAAGA
GGGAATCTCATAGCTCTGAGTGCCTCCAAAAAGAAACCAGAGAGAGCACA
CACTAGCAGCTTGACAACACACCTAAAAGCTGTAGAAAAAAAGGAAGCAA
ATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGCGAA
ATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATCAACCAAACAAG
GAGTTGGTTCTTTGAGAAAAATAAACATGATAGATGAACACTTAGCCAGA
CTCACTAGAGGGCACAAGGACAGCATCCTAATTAACAAAATCAGAAATGA
AAAGGGAGACATAACAACAAACCCTGAAGAAATATAAAACACCATCAGAT
CCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAN
NTTTATTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAGAGTAGTAGTTACC
TTTTGCTCTGGTTTTTCCCAACCCCTGGCTCTTAAATACCTCTGCTTCTT
TTTCCTGAATGGCCCCTGAATGTCAGAAGTCAGCAAACAATAGTGTACTG
CCTTAAATATATGTTAGGAAAATAGTGGAAGGCTTGTGGAAATAATCAAC
TAATACCAAATTTGATTTAGAGTCCATTCTAGAAGATGCAACCCATACCT
GACATTGCTTGAGTAATGAAAAGCCAGAAAAAAAAGATATAGCAGTGTCC
AAGGATAAAGCCAAATAATACTAATCTAAAGAAATAAAAATAAAAAGATA
TAAAATGGCTCCTCACTATATTCTGTCATAGTCATAGATCAGTGCCTTGG
TGCCAGCTATCACTGGAGAAGTTTCTTTCCACAACAGCAAAACTATAGAA
ACCTACATCCAGATATTACACAGAGAGAGAGTAAGGTCTCAGAAAACCCA
TGCCTGAACTGGATGGCTTTATCAAGTCCTTCCCTGCAGAGTGAAGGGAA
CACCATACAAATGGAGCTCACCAGGTCCTCTGCATAATTATTATGGCCTC
AAGTTTAATATTTTTGTGGGATTCTTAATTGTTTCAATGAGTGAGTCTCT
GACTCTTATGTCTCTTAAGCTATTTTCTTCCTGTTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_n12.g1 MSMg01no528_n12.g1 CHROMAT_FILE:
MSMg01no528_n12.g1 PHD_FILE: MSMg01no528_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:34 2005
         (656 letters)



>mm_chr17_60175367_60176422
          Length = 1056

 Score =  561 bits (290), Expect = e-164
 Identities = 299/304 (98%), Gaps = 4/304 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagagtagtagttaccttttgctctggtttttcccaacccctggctcttaaatacctc 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 atgaaagtagtagttaccttttgctctggtttttcccaacccctggctcttaaatacctc 245

                                                                       
Query: 61  tgcttctttttcctgaatggcccctgaatgtcagaagtcagcaaacaatagtgtactgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tgcttctttttcctgaatggcccctgaatgtcagaagtcagcaaacaatagtgtactgcc 185

                                                                       
Query: 121 ttaaatatatgttaggaaaatagtggaaggcttgtggaaataatcaactaataccaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ttaaatatatgttaggaaaatagtggaaggcttgtggaaataatcaactaataccaaatt 125

                                                                       
Query: 181 tgatttagagtccattctagaagatgcaacccatacctgacattgcttgagtaatgaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tgatttagagtccattctagaagatgcaacccatacctgacattgcttgagtaatgaaaa 65

                                                                       
Query: 241 gccag----aaaaaaaagatatagcagtgtccaaggataaagccaaataatactaatcta 296
           |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  gccagaaaaaaaaaaaagatatagcagtgtccaaggataaagccaaataatactaatcta 5

               
Query: 297 aaga 300
           ||||
Sbjct: 4   aaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)