BAC Information

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BAC

Clone NameMSMg01-528P23
Chromosome17 (Build37)
Map Location 52,757,060 - 52,757,561
singlet/doubletsinglet
Overlap genenone
Upstream geneSatb1, EG628919, LOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528P23.T7 (MSMg01no528_p23.b1)MSMg01-528P23.TJ (MSMg01no528_p23.g1)
ACCAG597981AG597982
length760808
length of high quality
(start - end)		680 (47 - 726)162 (64 - 225)
definitionCHROMAT_FILE: MSMg01no528_p23.b1 PHD_FILE: MSMg01no528_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:47 2005CHROMAT_FILE: MSMg01no528_p23.g1 PHD_FILE: MSMg01no528_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTAATAGGTTGAGCAGCTTTTCCAGAGAAAGCTTGTTAATGAGTTAC
GTTCTCTGAATACCTTGCAAAAAGCTCTTACTTCTCATCTTTTCTATTTG
AAAATCATTGCCATGTCAAACACTGGGGGTAAGGCAGGACATGTCATCAT
TGTAAAGGTCTTTCAGCTCATTGTGGGGAGGGGTGTTCAACATTTGAAAC
CTAGCCCTCCCTCTTAACCCTGTGGAGCTGCAGTTCCTTGCAACCCATTG
CATACAAACAGAAAGTGGGAAAATGGAGCAAAGATGAATGGCAAGGCTAC
TAACCAGCAATAAAGTGGAATGAACTATGTATCAGCTTGTATGAATGAAT
CTAAAAGGATTGATGTTGAATGAAAGTAGCTACTTCAAAAGCATTTATTA
TATAAGGCTTGTGCCATCACAAAATTACAGAGTACAGGAATCCAGAGTAG
TAATTGTCATGGGTTTAAAAAAGAGGTGGCTCTGGCTATAAAAGAAGAAG
TAGGATGAGAACTTTATGTGGGGGAAATGGTTCTGCAGTGTGAGTGTAGT
TCCCAGCTTAAGGATACACAGACAAGATAAAAAGCACAAAACTAAACACA
TACAGAAATGTATGTGTGTCAAATCAGTTAAAACTGGGATATGTAAGTAA
ATTGTCTCAATAGTTTTATGGATGAGATATGGTATTATATAGTTAGACAA
GACACTGACA

NAACCATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCGCGAGATTCTCTGTTTTGCTCTGTACCTCATCAT
TTAAATTGGGTTATTTGTTTTGTTGGTGTCTAAGTCCTTGAGTTTTTTGG
TTTTTGGGGGGTTTTTTTTGTTTTTTTTTGTTTTGTTTTGTTTTTTTTGT
TTGNTTGTTTTTATCAACCTTGGATATTAGTCCTCTGTCGGATATAATGT
TGGTGAAGAACCTTTCCTAATCTAACAGCTACTATTTTGTCCTATTGAGC
ATGTCCGTGGGCACATTTTTTTTTTTCAGCCACATGGCCGTCCGGCACAG
ATTTGTTCGATGTTAGTACCTGTATCAGTTTTTTATCTGTTTAAGTTTTT
TTTTCTTTTCTTTTGTGGCCCCCCCCCCTCCACCCCCAATTACCTTTTCA
TAAAATTCTTCGGCTTTTCTGTTCTCCAATGTGTCCACGTTAATTTTTCA
TTAGTTCTCACATTCGTCCAGCTCGCTTTTATTTCGCCCTTCATATATTA
TTTTTTGTCCTGCTGTCGTTTGACTTTCTTTAACTTGTCTCCCCATTTAT
CTTATTCTGTCATCTCATTTACTACACTTTTTACTTCATCAATTTCTTTC
GCTACCTATTTCGTCTACTTCCTTCTTTCCTTTCTTGAACATCAAATGTT
CCTTTATACCATCCTTCATGACAAATTTTTGCTCGTTTCTTAGCACCACA
TTTACGCATTCCTCTTTATTATACTCTCGTCCCTTTTTTTACAACTTTCA
TTTTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_p23.b1 MSMg01no528_p23.b1 CHROMAT_FILE:
MSMg01no528_p23.b1 PHD_FILE: MSMg01no528_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:47 2005
         (680 letters)



>mm_chr17_52757060_52758140
          Length = 1081

 Score =  955 bits (494), Expect = 0.0
 Identities = 500/502 (99%), Gaps = 1/502 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaatt-aataggttgagcagcttttccagagaaagcttgttaatgagttacgttctctga 63
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaattcaataggttgagcagcttttccagagaaagcttgttaatgagttacgttctctga 443

                                                                       
Query: 64  ataccttgcaaaaagctcttacttctcatcttttctatttgaaaatcattgccatgtcaa 123
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ataacttgcaaaaagctcttacttctcatcttttctatttgaaaatcattgccatgtcaa 383

                                                                       
Query: 124 acactgggggtaaggcaggacatgtcatcattgtaaaggtctttcagctcattgtgggga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acactgggggtaaggcaggacatgtcatcattgtaaaggtctttcagctcattgtgggga 323

                                                                       
Query: 184 ggggtgttcaacatttgaaacctagccctccctcttaaccctgtggagctgcagttcctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggggtgttcaacatttgaaacctagccctccctcttaaccctgtggagctgcagttcctt 263

                                                                       
Query: 244 gcaacccattgcatacaaacagaaagtgggaaaatggagcaaagatgaatggcaaggcta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gcaacccattgcatacaaacagaaagtgggaaaatggagcaaagatgaatggcaaggcta 203

                                                                       
Query: 304 ctaaccagcaataaagtggaatgaactatgtatcagcttgtatgaatgaatctaaaagga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ctaaccagcaataaagtggaatgaactatgtatcagcttgtatgaatgaatctaaaagga 143

                                                                       
Query: 364 ttgatgttgaatgaaagtagctacttcaaaagcatttattatataaggcttgtgccatca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ttgatgttgaatgaaagtagctacttcaaaagcatttattatataaggcttgtgccatca 83

                                                                       
Query: 424 caaaattacagagtacaggaatccagagtagtaattgtcatgggtttaaaaaagaggtgg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  caaaattacagagtacaggaatccagagtagtaattgtcatgggtttaaaaaagaggtgg 23

                                 
Query: 484 ctctggctataaaagaagaagt 505
           ||||||||||||||||||||||
Sbjct: 22  ctctggctataaaagaagaagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1081
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1071
Effective search space:   717570
Effective search space used:   717570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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