BAC Information

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BAC

Clone NameMSMg01-529C18
Chromosome17 (Build37)
Map Location 21,058,639 - 21,059,286
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4
Downstream geneLOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529C18.T7 (MSMg01no529_c18.b1)MSMg01-529C18.TJ (MSMg01no529_c18.g1)
ACCAG598114AG598115
length768762
length of high quality
(start - end)		691 (47 - 737)648 (74 - 721)
definitionCHROMAT_FILE: MSMg01no529_c18.b1 PHD_FILE: MSMg01no529_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:01 2005CHROMAT_FILE: MSMg01no529_c18.g1 PHD_FILE: MSMg01no529_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCA
GTAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAA
ATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTCTTCAACATAG
TACTTGAAGTCCTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGG
ATACAAATGGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATAT
GATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACC
TGATCAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAACAAG
TCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAA
GGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGTG
TGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCC
CTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTTTCATG
CTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAG
CAATCTACAGATTCAGTGCAATCCCCATCAAAATTCCAACTCAATTCTTC
AACGAATTAGAAAGAGCAATCTGCAAATTCATCTGGAATAACAAAAATCC
TAGGATAGCAAAAGCTCT

CCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGGAGACATTCAGAATTCTAAGAAAA
AGGGCAGTGGAGGACAATCAGGCATGTTATGATATAACTTGATAAGCAAA
GTTGGTATGTAGAAAGGGCCAGAGGCTTAAAGCTCAGCCATGGGTAACTC
CACATTCATAGGCTCCAGAAGATTTATTCAGCATGTTTATCTTTGCCTTT
CTTGTGAGTTTGTGTTTACCAAACATTTTACAATTGTATCATTTCACTCA
ACCTGAGAGAAAAACACCAATGATTTAAACTTCAGATGAAAAATTGTATA
CTGTATATTACAGAGTTACAAGGAGGAAAGAATAAGTAAGGGATGAGGGG
CAAATATGGATAAAATATATCTCTGAATAAAAACATATCTATATACATAT
TATTACTCAGATTCCTTGAAGATAAACTTTAAACCATTCCAAATCTGACT
GACTGCCATGTTGAACAATGGTCTGTGACATAAAAAGTACTGAATGGAGA
ATGGCCTTATGCTATATGAAAGGTCCTTCTTGGAAAGAGGTAACCACAAA
ACATGCATGAGTGTCTTTGGAAGCTGCTACTGAGTTTTAATGTCAGTCGA
TGTGGGGCCACATGTCAGTAACTCTGTGTCAGGCAGGATGAGCTGTGGCC
ATAAAGTGTCAACAGCCAGGTGGCCATTGAGTCACTTTTATCCTCTGAAG
TCAAAGAGATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_c18.g1 MSMg01no529_c18.g1 CHROMAT_FILE:
MSMg01no529_c18.g1 PHD_FILE: MSMg01no529_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:01 2005
         (648 letters)



>mm_chr17_21058439_21059486
          Length = 1048

 Score = 1237 bits (640), Expect = 0.0
 Identities = 646/648 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggagacattcagaattctaagaaaaagggcagtggaggacaatcaggcatgttatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggagacattcagaattctaagaaaaagggcagtggaggacaatcaggcatgttatgat 260

                                                                       
Query: 61  ataacttgataagcaaagttggtatgtagaaagggccagaggcttaaagctcagccatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataacttgataagcaaagttggtatgtagaaagggccagaggcttaaagctcagccatgg 320

                                                                       
Query: 121 gtaactccacattcataggctccagaagatttattcagcatgtttatctttgcctttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaactccacattcataggctccagaagatttattcagcatgtttatctttgcctttctt 380

                                                                       
Query: 181 gtgagtttgtgtttaccaaacattttacaattgtatcatttcactcaacctgagagaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgagtttgtgtttaccaaacattttacaattgtatcatttcactcaacctgagagaaaa 440

                                                                       
Query: 241 acaccaatgatttaaacttcagatgaaaaattgtatactgtatattacagagttacaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaccaatgatttaaacttcagatgaaaaattgtatactgtatattacagagttacaagg 500

                                                                       
Query: 301 aggaaagaataagtaagggatgaggggcaaatatggataaaatatatctctgaataaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaaagaataagtaagggatgaggggcaaatatggataaaatatatctctgaataaaaa 560

                                                                       
Query: 361 catatctatatacatattattactcagattccttgaagataaactttaaaccattccaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catatctatatacatattattactcagattccttgaagataaactttaaaccattccaaa 620

                                                                       
Query: 421 tctgactgactgccatgttgaacaatggtctgtgacataaaaagtactgaatggagaatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgactgactgccatgttgaacaatggtctgtgacataaaaagtactgaatggagaatg 680

                                                                       
Query: 481 gccttatgctatatgaaaggtccttcttggaaagaggtaaccacaaaacatgcatgagtg 540
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 gccttatgctatatgaaaggtccttcttggaaagcggtaaccacaaaacatgcatgagtg 740

                                                                       
Query: 541 tctttggaagctgctactgagttttaatgtcagtcgatgtggggccacatgtcagtaact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 741 tctttggaagctgctactgagttttaatgtcagtcgatgtggggccacatgtccgtaact 800

                                                           
Query: 601 ctgtgtcaggcaggatgagctgtggccataaagtgtcaacagccaggt 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctgtgtcaggcaggatgagctgtggccataaagtgtcaacagccaggt 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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