AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCGCCCTCTATTTCCCATGGTCTCCTGTGACCTGCTAACACTCATCCAC
ATCCATTTCTCAGAGAACATCTTTCAACATCAGGCACTATCTATGAGCTC
ATTGAAGGCAAGAGGTGATTTGATTTTAATCTCTGTAACTATTATCTGGT
GTCTGGCACTAAACAGATTGAGTGCTTAGTCCTCAACTGATCCAACAGAC
AGAAATTACTCTAAGTCGACTATGTAAATACATTATTTTTTTCAAAGAAA
ATTGTACAAATAGTGTTCTAAACGTGTATATATATTGTAATAGCATTTGG
TATATAAATTACTTTTGCATCATTGTGACCATGATTCTAACAAACATTTT
AAAGAAATAGCTTTTATTTGGGTTCATGGGTTCTGAAGATTTCTTTCCTT
CATGGCAGGAGACACTCAGCTGTGGGAACAAATGATGGAGTTTGTTCTCA
TCATGGTGAGAAAAAAAAAGCATAAAGTAAATTAAAAAGTAGGACCATAT
CTAGCCCATGCATGCTCTTCTACCTAGACCAGCTTGGCCCTATCTCCAAA
AGTGTTGTCTTTGGCATCACCAAATAGTACCACCAGCTGGGCAAAAAGAT
TTCAATGTGAGACTGTGGAGCCATCTCAGAATCATGGCACAATATTAAGC
AGTTAGTGTGAAGTCTTCACGGGAAAAGAATGAGAATGTTATTCTTGTCT
CTCTGTGTATGTACTTTCCA

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTACGTTTGCCTTTTGCCATCTGGTAATCT
CTGAAGCTAGCTGTTTTAGTTGTCTCTGTTAAGAGCTTGTTCTTCAGGTG
ACTCTGTTAGCCTCTATAAGCAGACCTGGGAGGGTAGCTCTCTCCTTAGT
TTCAGTGGGCAGAGTATTCTCTGCAGGCAAGCTCTCTTCTTGCAGGGAAT
GTACCCAGATATCTGGTGTTTGAACCGGCCTCCTGGCAGAAGTTGTGTTC
TACTCACTAGAGGTCTTAGGATCCCGTGTGGAATCCTGTGTGGGCCCTTG
TGGGTATCAGGCGACTCCGTTGGCAAGGTACCCCGGTGCTCGAGTGGAGT
GGAAGGGACTTTTGCCCCAGGTCTGGCCCGGGTAGTCTGCTTCCCTATTT
ACCGCAGTCTCAGGTTCTTCGAGATTGGATTGGGGCAGAAGCTGTGTTCC
ACTCACCAGAGATCTTAGGATCCCGTGGGGAATCCTGTGTGGGACCTTGC
GGGTGTCAGGCGACTCCGCTGGCAAGATACCCCGGTGCTCGAGTGGAGTG
GAAGAGACTTGTGCCCCAGGTCAGGCCCGGGTAGTCTGCTTCCCTATTTA
CGGCAGTCTCAGGTTCCTCGAGATTGGATTGGGGCAGGCGCTGTATTCCA
CTCACCAGAGATCTTAGGATCCAGTGGGGCTATTGTTGAACTCTTTATTC
ACAATAAGTTTT

Query= MSMg01no529_k21.b1 MSMg01no529_k21.b1 CHROMAT_FILE:
MSMg01no529_k21.b1 PHD_FILE: MSMg01no529_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:45 2005
         (675 letters)



>mm_chr17_82998400_82999474
          Length = 1075

 Score = 1220 bits (631), Expect = 0.0
 Identities = 661/671 (98%), Gaps = 2/671 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcgccctctatttcccatggtctcctgtgacctgctaacactcatccacatccatt 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcgccctctaagtcccatggtctcctgtgacctgctaacactcatccacatccatt 264

                                                                       
Query: 65  tctcagagaacatctttcaacatcaggcactatctatgagctcattgaaggcaagaggtg 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctcagagaacatctttcaacatcaggcactatctatgagctcattgaaggcaagaggtg 324

                                                                       
Query: 125 atttgattttaatctctgtaactattatctggtgtctggcactaaacagattgagtgctt 184
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttgtttttaatctctgtaactattatctggtgtctggcactaaacagattgagtgctt 384

                                                                       
Query: 185 agtcctcaactgatccaacagacagaaattactctaagtcgactatgtaaatacattatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtcctcaactgatccaacagacagaaattactctaagtcgactatgtaaatacattatt 444

                                                                       
Query: 245 tttttcaaagaaaattgtacaaatagtgttctaaacgtgtatatatattgtaatagcatt 304
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 445 tttttcaaagaaaattgtacaaatagtgttctaagcatgtatatatattgtaatagcatt 504

                                                                       
Query: 305 tggtatataaattacttttgcatcattgtgaccatgattctaacaaacattttaaagaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggtatataaattacttttgcatcattgtgaccatgattctaacaaacattttaaagaaa 564

                                                                       
Query: 365 tagcttttatttgggttcatgggttctgaagatttctttccttcatggcaggagacactc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagcttttatttgggttcatgggttctgaagatttctttccttcatggcaggagacactc 624

                                                                       
Query: 425 agctgtgggaacaaatgatggagtttgttctcatcatggtgagaaaaaaaaagcataaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 625 agctgtgggaacaaatgatggagtttgttctcatcatggtgagaaaaaaaa-gcataaag 683

                                                                       
Query: 485 taaattaaaaagtaggaccatatctagcccatgcatgctcttctacctagaccagcttgg 544
           |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 684 taaattcaaaagtaggaccatatctagcccatgcatgatcttctacctagaccagcttgg 743

                                                                       
Query: 545 ccctatctccaaaagtgttgtctttggcatcaccaaatagtaccaccagctgggcaaaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccctatctccaaaagtgttgtctttggcatcaccaaatagtaccaccagctgggcaaaaa 803

                                                                       
Query: 605 gatttcaatgtgagactgtggagccatctcagaatcatggcacaatattaagcagttagt 664
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 804 gatttcaatgtgagactgtggagccatctcagaa-catggcacaatattaagcagttagt 862

                      
Query: 665 gtgaagtcttc 675
           |||||||||||
Sbjct: 863 gtgaagtcttc 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)