BAC Information

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BAC

Clone NameMSMg01-529N03
Chromosome17 (Build37)
Map Location 55,666,390 - 55,666,982
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2
Downstream geneLOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529N03.T7 (MSMg01no529_n03.b1)MSMg01-529N03.TJ (MSMg01no529_n03.g1)
ACCAG598609AG598610
length754748
length of high quality
(start - end)		608 (50 - 657)593 (80 - 672)
definitionCHROMAT_FILE: MSMg01no529_n03.b1 PHD_FILE: MSMg01no529_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:56 2005CHROMAT_FILE: MSMg01no529_n03.g1 PHD_FILE: MSMg01no529_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TTAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTG
GGCATTTATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGAAAAGAACCTA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGC
CAAATGAATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCAC
AAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAA
ACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTC
AAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAAGTGT
GAAG

NCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTGATATTAGGAGTCCAT
TGAGGTTCTGTAAGTTACTTCCAAAGGGAGGGACTGATTCACCTCAGGCA
GTGCTGCAAAGCTATATGCGATGTACTATACTAAGATCCTGGAAACCACA
GTGAATCTATAGATATTACTGAACTCTAATCATTGATATAGAAAGGAAGG
AGAGTTGTTGGGCTGGTTTGATGCAGAACATCCTTGTAAGGTATCTACAT
ATGTGTAGCTATCATGTGTTCTTGAAGGAAGAGCAGACTCATTTGCCCAG
CCTGAGGAATCATCTTAGAACAAGAGAGGGCTGCCAAACTATAAAACTCA
ATTTATTCACCAACACAGAGACCCCTCCAACAATCTTACTCTAAGTGCGG
CAGCTATCTACTTTCCCTCATGATATCTAAGAGACCTGGGAAGACTGTGA
TGTTCATCTGTGTTATGATTCCGTCACTTTCAGAACTCAACCTTGGGCTA
GTTTTCCTAAGCCTTCACTGTTTAGTGGTGGGAAATAAATAATACCTATC
TTCAAGGTAGTTCTAGCAGCTTCATCTTCCGTGCAATCCAGGAAGACGAG
AGCTGAAATGTCTTTGCTCCATCAGACTCTGCAGCAGTTATAAACAGCCA
TTACACTCCAGTTCCTTCATGTCACTGGAGCCTTCTATGGGGCATCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_n03.g1 MSMg01no529_n03.g1 CHROMAT_FILE:
MSMg01no529_n03.g1 PHD_FILE: MSMg01no529_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:56 2005
         (593 letters)



>mm_chr17_55666190_55667182
          Length = 993

 Score = 1131 bits (585), Expect = 0.0
 Identities = 591/593 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtgatattaggagtccattgaggttctgtaagttacttccaaagggagggactgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tttgtgatattaggagtccattgaggttctgtaagttacttccaaagggagggactgatt 734

                                                                       
Query: 61  cacctcaggcagtgctgcaaagctatatgcgatgtactatactaagatcctggaaaccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 cacctcaggcagtgctgcaaagctatatgcgatgtactatactaagatcctggaaaccac 674

                                                                       
Query: 121 agtgaatctatagatattactgaactctaatcattgatatagaaaggaaggagagttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 agtgaatctatagatattactgaactctaatcattgatatagaaaggaaggagagttgtt 614

                                                                       
Query: 181 gggctggtttgatgcagaacatccttgtaaggtatctacatatgtgtagctatcatgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggctggtttgatgcagaacatccttgtaaggtatctacatatgtgtagctatcatgtgt 554

                                                                       
Query: 241 tcttgaaggaagagcagactcatttgcccagcctgaggaatcatcttagaacaagagagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tcttgaaggaagagcagactcatttgcccagcctgaggaatcatcttagaacaagagagg 494

                                                                       
Query: 301 gctgccaaactataaaactcaatttattcaccaacacagagacccctccaacaatcttac 360
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 493 gctgccaaactataaaactcaatttattcaccaacacagagatccttccaacaatcttac 434

                                                                       
Query: 361 tctaagtgcggcagctatctactttccctcatgatatctaagagacctgggaagactgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tctaagtgcggcagctatctactttccctcatgatatctaagagacctgggaagactgtg 374

                                                                       
Query: 421 atgttcatctgtgttatgattccgtcactttcagaactcaaccttgggctagttttccta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atgttcatctgtgttatgattccgtcactttcagaactcaaccttgggctagttttccta 314

                                                                       
Query: 481 agccttcactgtttagtggtgggaaataaataatacctatcttcaaggtagttctagcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agccttcactgtttagtggtgggaaataaataatacctatcttcaaggtagttctagcag 254

                                                                
Query: 541 cttcatcttccgtgcaatccaggaagacgagagctgaaatgtctttgctccat 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cttcatcttccgtgcaatccaggaagacgagagctgaaatgtctttgctccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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