Query= MSMg01no529_o14.b1 MSMg01no529_o14.b1 CHROMAT_FILE:
MSMg01no529_o14.b1 PHD_FILE: MSMg01no529_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:03 2005
(682 letters)
>mm_chr17_6028546_6029623
Length = 1078
Score = 1245 bits (644), Expect = 0.0
Identities = 668/678 (98%), Gaps = 4/678 (0%)
Strand = Plus / Plus
Query: 5 gaattcatatcctgtactgaatggtagaatcttccattaagttgactcttgatgcttcca 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatatcctggactgaatggtagaatcttccattaagttgactcttgatgcttcca 264
Query: 65 aaattccaaagctgctttccattgtcagtcactgtgtccctaactggagagaagctctaa 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaattccaaagctgctttccagtgtcagtcactgtgtccctaactggagagaagctctaa 324
Query: 125 ccaacagcacaggacccttgggctaggcctgggaatacagagccgacaggaaattaagct 184
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 ccaacagcacaggacccttgggctagacctgggaatacagagccgacaggaaattaagct 384
Query: 185 gtctctttgacaagagaggtacaaagactcacctacctccatgtattcctttgattaaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ----ctttgacaagagaggtacaaagactcacctacctccatgtattcctttgattaaat 440
Query: 245 aatactccccaaacccatcggtagcttaccatgctagaaacactggttggttttagcact 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatactccccaaacccatcggtagcttaccatgctagaaacactggttggttttagcact 500
Query: 305 ttgagttgctgagtctgccatagagatttttggtaaggtatgtgtggcgattatatacac 364
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 ttgagttgctgagtctgccatagagatttttggtaaggtatgtgtggcaattatatacac 560
Query: 365 agacatgtttagcgaatgatagcaggccagcattggtgaccctcacactcctcaagtttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agacatgtttagcgaatgatagcaggccagcattggtgaccctcacactcctcaagtttt 620
Query: 425 ctctctcacagctttggcccctcttggtcttcccagagtcatgtaccagccacggtgtca 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 ctctctcacagctttggcccctcttggtcttcccagagtcatgtaccagccacgatgtca 680
Query: 485 ggcacccaggaggtggcccgctgaagcctctagtctaagtttgctactggatgccaggct 544
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtacccaggaggtggcccgctgaagcctctagtctaagtttgctactggatgccaggct 740
Query: 545 agcaagagaagggagagctcttctcaacttccaaatcagcagccacattctaggaggagg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agcaagagaagggagagctcttctcaacttccaaatcagcagccacattctaggaggagg 800
Query: 605 aattaagttctcttccctgtggtgggtgtctcgtaggagctctggtgtcaccctgtcctc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aattaagttctcttccctgtggtgggtgtctcgtaggagctctggtgtcaccctgtcctc 860
Query: 665 tgcctgtgtagagctgtg 682
||||||||||||||||||
Sbjct: 861 tgcctgtgtagagctgtg 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1078
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1068
Effective search space: 717696
Effective search space used: 717696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_o14.g1 MSMg01no529_o14.g1 CHROMAT_FILE:
MSMg01no529_o14.g1 PHD_FILE: MSMg01no529_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:03 2005
(678 letters)
>mm_chr17_6167360_6168437
Length = 1078
Score = 1272 bits (658), Expect = 0.0
Identities = 670/674 (99%)
Strand = Plus / Minus
Query: 5 aaggaccttcctgggtatggttgtacattctacaagccagcagcagggaagctaacactg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 aaggaccttcctgggtatggttgtacattctacaagccagcagcagggaagctaacactg 1019
Query: 65 gcgagctgggggcctgggctatgaagcaaggatgagcttatacaagcaaagtgaaatgtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 gcgagctgggggcctgggctatgaagcaaggatgagcttatacaagcaaagtgaaatgtg 959
Query: 125 tactaacgagagagagagagagagagaaagagagagagagagagagagagagagagagag 184
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 958 tactaatgagagagagagagaaagagagagagagagagagagagagagagagagagagag 899
Query: 185 agagagagagagagagatgtatttttataagtaaactaacaggcttgaagtccttatgct 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 agagagagagagagagatgcatttttataagtaaactaacaggcttgaagtccttatgct 839
Query: 245 aaaagtaaaattcttatctgggaatagcattgagcaagcatcctcctagccatggaggaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 aaaagtaaaattcttatctgggaatagcattgagcaagcatcctcctagccatggaggaa 779
Query: 305 ggctgaggcaagtagaccatgaacccacagtgctgacatgcggaaccccaacaccaggct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ggctgaggcaagtagaccatgaacccacagtgctgacatgcggaaccccaacaccaggct 719
Query: 365 ccggtctgtcctcacagtcagtcactgttagtcactggtctgtcctgataatcagtcact 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccggtctgtcctcacagtcagtcactgttagtcactggtctgtcctgataatcagtcact 659
Query: 425 gttagcgttcttctgcatccccaggccttgagctactctgtcatgtggaccctgacatct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gttagcgttcttctgcatccccaggccttgagctactctgtcatgtggaccctgacatct 599
Query: 485 tcatcctgggtgtggatgagttttctgtctgctctaggacaccatcagcacatttctgct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tcatcctgggtgtggatgagttttctgtctgctctaggacaccatcagcacatttctgct 539
Query: 545 aacttaagtttaatttccttcctgtcatccatgaccttgaactaccagacaattcaaaac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aacttaagtttaatttccttcctgtcatccatgaccttgaactaccagacaattcaaaac 479
Query: 605 tgcaccttcagataagtttattgaaaaaggtgtgacactgtttctgagccactttcattt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tgcaccttcagataagtttattgaaaaaggtgtgacactgtttctgagccactttcattt 419
Query: 665 tgatcattcattgt 678
||||||||||||||
Sbjct: 418 tgatcattcattgt 405
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 113
Number of extensions: 25
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
