BAC Information

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BAC

Clone NameMSMg01-530B14
Chromosome17 (Build37)
Map Location 93,462,404 - 93,462,784
singlet/doubletsinglet
Overlap genenone
Upstream geneEG640442, LOC627395, LOC676141, LOC668877, LOC100043746, LOC100043747, LOC100043748, LOC100043907
Downstream geneAdcyap1, LOC676157, LOC627503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530B14.T7 (MSMg01no530_b14.b1)MSMg01-530B14.TJ (MSMg01no530_b14.g1)
ACCAG598818AG598819
length785795
length of high quality
(start - end)		672 (46 - 717)537 (74 - 610)
definitionCHROMAT_FILE: MSMg01no530_b14.b1 PHD_FILE: MSMg01no530_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:18 2005CHROMAT_FILE: MSMg01no530_b14.g1 PHD_FILE: MSMg01no530_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTTTCTTCTCTATCCTCTATATGTGATTTGTTATTTTTCACAAT
AACCTATCTTAGGCAGAGATTTTATAAAAGAAAAATAAAAAAAAGAGAAA
AAGAAAAGAAACAAAAAGAAAACTACCAAAGAATGTGTATCAGAGACAAG
AAGCATTTGCGGTTTTTTTTTTGTTTTGTTTTTTGTTTTTTGTTTTTTTT
TTCCTAGTAAATTTTGGAAGCTCATGAATATAACCAGTAAGTTGTATGTC
TGATATAAGCCCATTACCTGGCTTTCAAACACCTTTTCAGTGTAACTTTA
TGTGGTGGGAAAAGTTCTGAAAGTTTAATATTTTTAAGAACATTGATCAC
ATCAGAGCAACTCCATTTTAATGGCATCATCCAAGTCTCATAACCTTGAT
GGTCCCAAACTTTCAAGAATTATCACATTGAGGAATATAGTTTCAAGATA
CAAATTTTGTGTGGCACACAAATATTTGGCCCATAGCAAAAGCTAAAATC
CAATCATGATACAAGTTTAACTTTAAAGTGTTCCCCAATACATTTAATGA
AGCTGTTTGTTTCATATAGGTGTGTGTAATAAGATATATTAAGTTAGGAG
TCAGACAAGTTTAACAGAGCACTGATACCAGATTGCATGTTCCTTGGCTA
AAATTATGCTTTGTTTCCATAGTTGGCTAGATGTTGACTGAGTTCATTAG
CTGATTACTAATTAAATAAACAAACACATATTTAG

CCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTACAGAATGAAATAAAGTTTTTACT
AAAATAAGATGGCCCGTTATCTGTCTTATTAAGTTTAGGCAATCCCATGG
CATTAAAGGCTTGTAGGCAATGATCAATTATGTTTTTTGTTTATTTATTT
ATTTATTTATTTATTTATTTATTTATTTTCATTTTTTATTAGGTATTTAG
CTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACC
CCCACTCCCCTACCCACCCACTCCCCATTTTTGGCCCTGGCGTTCCCCTG
TACTGGGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTTTTTCCAGTGC
TGGCCGACTAGGCCTTCTTTTGATACATATGCAGCTAGAGTCAAGAGCTC
CAGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATC
CCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTG
ATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGTCC
CTGCATAGTCTCACAAGAGAGAGCTACATCTGGGTCCTTTCGATAAAATT
TTGCTAGTGTATGCAATGGTGTGAGCATTTGGATGCTGATTATGGGGTGG
ATCCCTGGATATGGCAGTCTCTACATGGTCCATCCTTTCATCTCAGCTCC
AAACTTTGTCTCTGTAACTCCTTCATGGGTGGTTTGTTCCCAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_b14.b1 MSMg01no530_b14.b1 CHROMAT_FILE:
MSMg01no530_b14.b1 PHD_FILE: MSMg01no530_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:18 2005
         (672 letters)



>mm_chr17_93461711_93462784
          Length = 1074

 Score =  698 bits (361), Expect = 0.0
 Identities = 376/381 (98%), Gaps = 2/381 (0%)
 Strand = Plus / Minus

                                                                        
Query: 294  agtgtaactttatgtggtgggaaaagttctgaaagtttaatatttttaagaacattgatc 353
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1074 agtgtaactttatgtggtgggaaaagttctgaaggtttaatatttttaagaacattgatc 1015

                                                                        
Query: 354  acatcagagcaactccattttaatggcatcatccaagtctcataaccttgatggtcccaa 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 acatcagagcaactccattttaatggcatcatccaagtctcataaccttgatggtcccaa 955

                                                                        
Query: 414  actttcaagaattatcacattgaggaatatagtttcaagatacaaattttgtgtggcaca 473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954  actttcaagaattatcacattgaggaatatagtttcaagatacaaattttgtgtggcaca 895

                                                                        
Query: 474  caaatatttggcccatagcaaaagctaaaatccaatcatgatacaagtttaa-ctttaaa 532
            ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 894  caaatatttggcccatagcaaaagctaaaattcaatcatgatacaagtttaaactttaaa 835

                                                                        
Query: 533  gtgttccccaatacatttaatgaagctgtttgtttcatataggtgtgtgtaataagatat 592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834  gtgttccccaatacatttaatgaagctgtttgtttcatataggtgtgtgtaataagatat 775

                                                                        
Query: 593  attaagttaggagtcagacaagtttaacagagcactgataccagattgcatgttccttgg 652
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 774  attaagttaggagtcagacaagttaaacagagcactgataccagattgcatgttccttgg 715

                                 
Query: 653  ctaaaa-ttatgctttgtttc 672
            |||||| ||||||||||||||
Sbjct: 714  ctaaaaattatgctttgtttc 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1074
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1064
Effective search space:   704368
Effective search space used:   704368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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