BAC Information

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BAC

Clone NameMSMg01-530F10
Chromosome17 (Build37)
Map Location 55,835,113 - 55,835,768
singlet/doubletsinglet
Overlap genePot1b
Upstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258
Downstream geneEmr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530F10.T7 (MSMg01no530_f10.b1)MSMg01-530F10.TJ (MSMg01no530_f10.g1)
ACCAG599000AG599001
length754769
length of high quality
(start - end)		660 (52 - 711)606 (83 - 688)
definitionCHROMAT_FILE: MSMg01no530_f10.b1 PHD_FILE: MSMg01no530_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:37 2005CHROMAT_FILE: MSMg01no530_f10.g1 PHD_FILE: MSMg01no530_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAAAACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATGAACGTGTCAAGCAAGCAGATGTAGCAGAGGCTAACT
CATCCTTAGGACCGAGCATACTGGACCACGTCCAAACAACTTTTGCTGCA
TTGAGTCCGAAGGCTCCTTTATGAAATGAACAACTATCAAATATGTGGTG
CTAGTATTTTTTTTAATGAACTAGCTCTAGTACAAATAAAATGCTCCCTT
TTTCTTGCAAATCTCTGGTAGTACTTTATGTCTGATAATATCATTATTTC
ATTGTCTTATTGCTTGCTAATTCATTTCCTATAGTTTTAGCTCTAATTTG
TATCTTCATATTCAAAGTACTCTTTGTAGGCAGCACATAATTCTTGCTTT
TTATTTTTATGCTTTTCTGGCAAGCAGAACACATTCACTATAAAAACACC
ATTGGTGCAGGAGCTCTGCACGGAGCGAGTTCCCTTCTTTCCTTGACTCT
GTGCTTTTCAACAACTGCCTCCTATTTCCCCTTTGTTTTTTCCTCCTTTG
GAATTCTTAATGTTTCATTTACGCCCTTGGGTAAAAATGGCTCCTTGTGT
CTTGGTCTGCACTGAAACCCTGTATGTTTTTAACAGAAACTTCCTGCTTT
CCAACCCCCTGGCCTTTGCACACTCTCCTACACAACAGCACTTGTTGCCC
CTATCATCCTACACGATTGTTAATGCTTTAAATAATAATTTCTTAGTGAA
ATTA

NNNNNCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGAAAATGAAGGCACA
AAATATCTAAACTTATGGAACACAATGAAAATAGTGCTAGGAGAAAAATT
CACTGCACTAAGTGCCTTCATATAGAAATTGGAAACACTCTATACTAGCA
ACTTAAGAGTACACCCAAAAGTTCTAGAACAAAAAAGAAACAAACATACA
AAACAGGAGTAGGAAATGGCAGGAAATAATCATATTCATGGCTGCAATCA
ACTAATTTGAAAAAAGAAAAGAGAGAGCAATGAAAAGAATCACCAATTGC
GAACTTTATCTGCCCCAGTACAGGGGATGCCAGGGCCAGGAAGCAGGAGT
GGGTGGGTAGGGGAGCAGGACAGGGGGAGGGTATAGGGAACTTTCGGGAT
AGCATTTGAAATGTATATAAAAAAAATCTAATAAAAAATAAATTAAAAAA
AAAGAATCACCAAAACTAAGAGTGGGTTCTTTGACAAAAGCAAGCCTTAA
CCCAATTAACTACAAGACACAGAGAGAGTACCAAAAATTAACAAAATCAA
AAATAAAATGGCTGACATAACAACAGAAACTGAGGACATTCAAAAAATCA
TCTGATGTTACTAGAAAAGCACTTGACATAACTGGGATATCTAGACAAAA
TGGTTGGGGTTATAGACAGATATCACTTACCAAAGATAAATGAAAATCAC
GGTAACTATCTCAACAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_f10.b1 MSMg01no530_f10.b1 CHROMAT_FILE:
MSMg01no530_f10.b1 PHD_FILE: MSMg01no530_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:37 2005
         (660 letters)



>mm_chr17_55834909_55835968
          Length = 1060

 Score = 1253 bits (648), Expect = 0.0
 Identities = 654/656 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgaacgtgtcaagcaagcagatgtagcagaggctaactcatccttaggaccga 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgaacgtggaaagcaagcagatgtagcagaggctaactcatccttaggaccga 264

                                                                       
Query: 65  gcatactggaccacgtccaaacaacttttgctgcattgagtccgaaggctcctttatgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcatactggaccacgtccaaacaacttttgctgcattgagtccgaaggctcctttatgaa 324

                                                                       
Query: 125 atgaacaactatcaaatatgtggtgctagtattttttttaatgaactagctctagtacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgaacaactatcaaatatgtggtgctagtattttttttaatgaactagctctagtacaa 384

                                                                       
Query: 185 ataaaatgctccctttttcttgcaaatctctggtagtactttatgtctgataatatcatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataaaatgctccctttttcttgcaaatctctggtagtactttatgtctgataatatcatt 444

                                                                       
Query: 245 atttcattgtcttattgcttgctaattcatttcctatagttttagctctaatttgtatct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttcattgtcttattgcttgctaattcatttcctatagttttagctctaatttgtatct 504

                                                                       
Query: 305 tcatattcaaagtactctttgtaggcagcacataattcttgctttttatttttatgcttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcatattcaaagtactctttgtaggcagcacataattcttgctttttatttttatgcttt 564

                                                                       
Query: 365 tctggcaagcagaacacattcactataaaaacaccattggtgcaggagctctgcacggag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctggcaagcagaacacattcactataaaaacaccattggtgcaggagctctgcacggag 624

                                                                       
Query: 425 cgagttcccttctttccttgactctgtgcttttcaacaactgcctcctatttcccctttg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cgagttcccttctttccttgactctgtgcttttcaacaactgcctcctatttcccctttg 684

                                                                       
Query: 485 ttttttcctcctttggaattcttaatgtttcatttacgcccttgggtaaaaatggctcct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttttttcctcctttggaattcttaatgtttcatttacgcccttgggtaaaaatggctcct 744

                                                                       
Query: 545 tgtgtcttggtctgcactgaaaccctgtatgtttttaacagaaacttcctgctttccaac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtgtcttggtctgcactgaaaccctgtatgtttttaacagaaacttcctgctttccaac 804

                                                                   
Query: 605 cccctggcctttgcacactctcctacacaacagcacttgttgcccctatcatccta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cccctggcctttgcacactctcctacacaacagcacttgttgcccctatcatccta 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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