Query= MSMg01no530_j13.b1 MSMg01no530_j13.b1 CHROMAT_FILE:
MSMg01no530_j13.b1 PHD_FILE: MSMg01no530_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:58 2005
(616 letters)
>mm_chr17_15371219_15372234
Length = 1016
Score = 1133 bits (586), Expect = 0.0
Identities = 608/618 (98%), Gaps = 6/618 (0%)
Strand = Plus / Minus
Query: 2 ggaattctgctctt---ttcctccaagaaagttcatcatggaaccaccaattcctgaacc 58
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 816 ggaattctgctcttgaat---tccaagaaagttcatcatggaaccaccaattcctgaacc 760
Query: 59 tcactaagtggacacatcaccttcctgattcagcagtgcattctggctgaatgctctata 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tcactaagtggacacatcaccttcctgattcagcagtgcattctggctgaatgctctata 700
Query: 119 gcttggggaccacatagctctgcacctggtgggttgtcctctccaggccaaccagtacct 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gcttggggaccacatagctctgcacctggtgggttgtcctctccaggccaaccagtacct 640
Query: 179 gtttaaggattcaaaagtcacaaacctccatgggaaatctgggaagctgaacccctggag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gtttaaggattcaaaagtcacaaacctccatgggaaatctgggaagctgaacccctggag 580
Query: 239 acacttatggggtctctgacatctgagaatgtgggcatggttcagtgacccagcttgaca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 acacttatggggtctctgacatctgagaatgtgggcatggttcagtgacccagcttgaca 520
Query: 299 agtgaaggtgaataggaagagcatcatgctggccaagagctctctgcctgtaaaagaaag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agtgaaggtgaataggaagagcatcatgctggccaagagctctctgcctgtaaaagaaag 460
Query: 359 agcattgcactctgaaataggactctattgaatttatgaagaaagcagtcattcaaagtc 418
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 459 agcattgcactctgaaatgggactcaattgaatttatgaagaaagcagtcattcaaagtc 400
Query: 419 accatggtgactatcacttactgagcactccaagcagtaggtgctagatgctctgttagg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 accatggtgactatcacttactgagcactccaagcagtaggtgctagatgctctgttagg 340
Query: 479 tttgttatgaatattattatctctgagtcttctcaaggatccaataaaacatcttgtttc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tttgttatgaatattattatctctgagtcttctcaaggatccaataaaacatcttgtttc 280
Query: 539 acaagggaactaaggcattgagagaatgtgtcccacttcatcctccttcccccttttctt 598
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 279 acaagggaactaaggcattgagagaatgtgccccacttcatcctccttcccctttttctt 220
Query: 599 tggtttcactttgtagct 616
||||||||||||||||||
Sbjct: 219 tggtttcactttgtagct 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_j13.g1 MSMg01no530_j13.g1 CHROMAT_FILE:
MSMg01no530_j13.g1 PHD_FILE: MSMg01no530_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:58 2005
(672 letters)
>mm_chr17_15189984_15191055
Length = 1072
Score = 1268 bits (656), Expect = 0.0
Identities = 668/672 (99%)
Strand = Plus / Plus
Query: 1 ttgtgggatttcctgaactatcaggagggtcctcgtatccgggatcgtttaagccatggg 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ttgtgggatttcctgaactatcaggagggtcctcgtatccgggatcgtataagccatggg 260
Query: 61 gagatcaacatacgtgaatttccagaagaggccgcaggccagctgctcacattctccctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagatcaacatacgtgaatttccagaagaggccgcaggccagctgctcacattctccctg 320
Query: 121 gtgctgctgctcagattcactgagaaggggacagtgtcagaactgaaggtaccacagagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgctgctgctcagattcactgagaaggggacagtgtcagaactgaaggtaccacagagg 380
Query: 181 gagggaggagggtggctggcggaatgtactaccaccagcaagggaagagcatgtcttatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagggaggagggtggctggcggaatgtactaccaccagcaagggaagagcatgtcttatt 440
Query: 241 tctcaaatttgatttatcttaatttgagttacagtaccctgtcagaatatatgcatgtgt 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tctcaaatttgatttatcttaatttgagttacagtaccctgtcagaatgtatgcatgtgt 500
Query: 301 acattctctaaaagtctgggttctgaagctgaaataatttgtctttgaaatgcctttttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acattctctaaaagtctgggttctgaagctgaaataatttgtctttgaaatgcctttttg 560
Query: 361 cctctgttcttaatagcagtgtcagtgttaaaaaccaaagagtaagttacgcaacatggt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctctgttcttaatagcagtgtcagtgttaaaaaccaaagagtaagttacgcaacatggt 620
Query: 421 tggccaagtgtgggagacgcccacagtgcctgctaaactgatggagcaggatagttatag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggccaagtgtgggagacgcccacagtgcctgctaaactgatggagcaggatagttatag 680
Query: 481 ttttgaaactaatgattttgttgttttaaagtaaatagcttcagctgtagtagtgtaggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttgaaactaatgattttgttgttttaaagtaaatagcttcagctgtagtagtgtaggt 740
Query: 541 gggacttttgttttcagtttagatgcatgacagttaaaagaacctagtggggaaacccca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gggacttttgttttcagtttagatgcatgacagttaaaagaacctagtggggaaacccca 800
Query: 601 ctcaattcccgattcggtgtgcacccaagaatcacgaacagaacagaatgccttgatgta 660
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctcaattcccaattcggtgtgcacccaagaatcacgaacagaacagaatgccttgatgta 860
Query: 661 aaaacatgaggt 672
||||||||||||
Sbjct: 861 aaaacatgaggt 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
