BAC Information

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BAC

Clone NameMSMg01-531B01
Chromosome17 (Build37)
Map Location 63,185,447 - 63,362,360
singlet/doubletdoublet
Overlap geneEfna5
Upstream genenone
Downstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531B01.T7 (MSMg01no531_b01.b1)MSMg01-531B01.TJ (MSMg01no531_b01.g1)
ACCAG599556AG599557
length741731
length of high quality
(start - end)
689 (53 - 741)519 (80 - 598)
definitionCHROMAT_FILE: MSMg01no531_b01.b1 PHD_FILE: MSMg01no531_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:35 2005CHROMAT_FILE: MSMg01no531_b01.g1 PHD_FILE: MSMg01no531_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,185,447 - 63,186,131)(63,361,867 - 63,362,360)
sequence
CCCTTATCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTTATATTGGTGCAACTAACTTTAAAACAATAATAGC
ACTTACCAATTGTTGACTATTTCCATTATACCACTATGGTGGCTGAGATC
TTTGCAACTTATGACTTCGTTCTCTAACTGAATCCTTCTAACAAAGTGCC
ATGTCATTATTATGCTTTTGTTTTTATGTCTTAAAAAACCGAGGTGGACT
AAACTTCATCCGTGGAGCTGGGGTATTCCAATTAGGCTTCAAGCCCAGAC
TTAGAGAATACCAAAGCAGTTCTCCTCACCATGACAGAGCATCTCCTCTT
CAGCTGGGCCTTATGGCTTTCATTTTATGTAGGCATGCCACCATGAAGGT
GCTAATGAACAGAAAGCTGGGGCAACAGAGAGACAGAAGCGCTCACTGCT
AATGTTTTCCTTGACACTCAGAGTAGCCTCCAGTCAACTTCACTTTTTAG
GGCCTAGTGTTTCCTCTCCCAACAATGTACCTAAGAGGAAGTCACCTTCT
CATGTTCACCTTGACGAGCCAACTTCACACAGTCTCCCCTTGTTTTCATG
CAATGTTCTCTCTGCCCTTCCTTAAGGGAGCAAGTTCAGATCAACATGAG
AAGTGTGTGCGGAGTGCCAGACCCTTACCTATTTTCAGCCTCCTAGTTTA
GAAGCCGAAAATAAATCAAGTGAGATGCATAGAAAAACTCT
TTCTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAGAAAACACCATTTCTA
TTTTGTGTGCTTCCTATGAAAGATTGGCTACCAGATCTTTCTCTCTTTTG
TGTATTGTTCTTATCCAGAACCCCATCCTTATTTTAGCTCTGAACATATT
CTTGGTATTTTGTAAAAGTTAATAATAATGCATTTCCATTACATGTATTT
GCCCCATAACTATCCCCAGATATATAAATGAGAGAGAGAGAGAGAGAGAG
AGATATGCCATGGATATTTATAATATTCGACTCACTCCAGAATGATTCTG
AGATTCTGTTGGGTCAGCCATCTGGCCCCTGTACTACAGGCTGTCTTGTG
TCTGACTGCAGTGTCTCCCAACCTTCTATCTCCTTATTTAATTGGGTGAC
AGCTTTGCTTTGGTGGTCAAATCCAGCCCCCAACCTGCTTGACCTTTTTC
TCTCGTGGAGAGCCAATCCTGAAACGGTTACATTGAGCACCGTCAAGGGG
GTGGTTGCATGCCAGAGGTGGAGGATGGAGAGTGGGAAAGGGAGGAGANA
NNNNNNNNTTTNNTNNTNNNTTNTTNTTTTTTTGTGTGGGTTTTTTTGTT
TTGTGTTTGTTGGTGGGGTTTTGTTTGTTTTTTTTTGTTGGTGGTTTTTT
TTGTTTTGTTTTGTTTTTTTGTGTTGGTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_b01.b1 MSMg01no531_b01.b1 CHROMAT_FILE:
MSMg01no531_b01.b1 PHD_FILE: MSMg01no531_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:35 2005
         (689 letters)



>mm_chr17_63185243_63186331
          Length = 1089

 Score = 1278 bits (661), Expect = 0.0
 Identities = 679/685 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttatattggtgcaactaactttaaaacaataatagcacttaccaattgttga 64
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttagaatggtgcaactaactttaaaacaataatagcacttaccaattgttga 264

                                                                       
Query: 65  ctatttccattataccactatggtggctgagatctttgcaacttatgacttcgttctcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctatttccattataccactatggtggctgagatctttgcaacttatgacttcgttctcta 324

                                                                       
Query: 125 actgaatccttctaacaaagtgccatgtcattattatgcttttgtttttatgtcttaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 actgaatccttctaacaaagtgccatgtcattattatgcttttgtttttatgtcttagaa 384

                                                                       
Query: 185 aaccgaggtggactaaacttcatccgtggagctggggtattccaattaggcttcaagccc 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacagaggtggactaaacttcatccgtggagctggggtattccaattaggcttcaagccc 444

                                                                       
Query: 245 agacttagagaataccaaagcagttctcctcaccatgacagagcatctcctcttcagctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agacttagagaataccaaagcagttctcctcaccatgacagagcatctcctcttcagctg 504

                                                                       
Query: 305 ggccttatggctttcattttatgtaggcatgccaccatgaaggtgctaatgaacagaaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggccttatggctttcattttatgtaggcatgccaccatgaaggtgctaatgaacagaaag 564

                                                                       
Query: 365 ctggggcaacagagagacagaagcgctcactgctaatgttttccttgacactcagagtag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctggggcaacagagagacagaagcgctcactgctaatgttttccttgacactcagagtag 624

                                                                       
Query: 425 cctccagtcaacttcactttttagggcctagtgtttcctctcccaacaatgtacctaaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctccagtcaacttcactttttagggcctagtgtttcctctcccaacaatgtacctaaga 684

                                                                       
Query: 485 ggaagtcaccttctcatgttcaccttgacgagccaacttcacacagtctccccttgtttt 544
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gggagtcaccttctcatgttcaccttgacgagccaacttcacacagtctccccttgtttt 744

                                                                       
Query: 545 catgcaatgttctctctgcccttccttaagggagcaagttcagatcaacatgagaagtgt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 catgcaatgttctctctgcccttccttaagggagcaagttcagatcaacatgagaagtgt 804

                                                                       
Query: 605 gtgcggagtgccagacccttacctattttcagcctcctagtttagaagccgaaaataaat 664
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gtgcagagtgccagacccttacctattttcagcctcctagtttagaagccgaaaataaat 864

                                    
Query: 665 caagtgagatgcatagaaaaactct 689
           |||||||||||||||||||||||||
Sbjct: 865 caagtgagatgcatagaaaaactct 889


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no531_b01.g1 MSMg01no531_b01.g1 CHROMAT_FILE:
MSMg01no531_b01.g1 PHD_FILE: MSMg01no531_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:35 2005
         (519 letters)



>mm_chr17_63361442_63362360
          Length = 919

 Score =  797 bits (412), Expect = 0.0
 Identities = 457/494 (92%), Gaps = 34/494 (6%)
 Strand = Plus / Minus

                                                                       
Query: 60  ttctctcttttgtgtattgttcttatccagaaccccatccttattttagctctgaacata 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 ttctctcttttgtgtattgttcttatccagaaccccatccttattttagctctgaacata 860

                                                                       
Query: 120 ttcttggtattttgtaaaagttaataataatgcatttccattacatgtatttgccccata 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 859 ttcttggtattttgtaaaagttaataataatgcatttccattacatgtatttgccccaca 800

                                                                       
Query: 180 actatccccagatatataaat----------------------------------gagag 205
           |||||||||||||||||||||                                  |||||
Sbjct: 799 actatccccagatatataaatctgagagagagagagagagagagagagagagagagagag 740

                                                                       
Query: 206 agagagagagagagagagatatgccatggatatttataatattcgactcactccagaatg 265
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 agagagagagagagagagagatgccatggatatttataatattcgactcactccagaatg 680

                                                                       
Query: 266 attctgagattctgttgggtcagccatctggcccctgtactacaggctgtcttgtgtctg 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 attctgagattctgttgggtcagccatctggcccctgtactacaggctgtcttgtgtctg 620

                                                                       
Query: 326 actgcagtgtctcccaaccttctatctccttatttaattgggtgacagctttgctttggt 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 actgcagtgtctcccaaccttctatctccttatttaattgggtgacagctttgctttggt 560

                                                                       
Query: 386 ggtcaaatccagcccccaacctgcttgacctttttctctcgtggagagccaatcctgaaa 445
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 559 ggtcaaatccagcccccaacctgcttgacctttttctctcatggagagccaatcctgaaa 500

                                                                       
Query: 446 cggttacattgagcaccgtcaagggggtggttgcatgccagaggtggaggatggagagtg 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cggttacattgagcaccgtcaagggggtggttgcatgccagaggtggaggatggagagtg 440

                         
Query: 506 ggaaagggaggaga 519
           ||||||||||||||
Sbjct: 439 ggaaagggaggaga 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)